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Report for CCDS31524.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31524.2 Public Homo sapiens 11 OR5T3 24 110 108 CCDS HistoryNCBI Gene:390154Re-query CCDS DB by CCDS ID:31524.2Re-query CCDS DB by GeneID:390154See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 31524.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000313033.4 ENSP00000323612.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000313033.4Link to Ensembl Protein Viewer:ENSP00000323612.3Re-query CCDS DB by Nucleotide ID:ENST00000313033Re-query CCDS DB by Protein ID:ENSP00000323612
Original member Current member NCBI NM_001004747.2 NP_001004747.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004747.2Link to Protein Sequence:NP_001004747.2Re-query CCDS DB by Nucleotide ID:NM_001004747Re-query CCDS DB by Protein ID:NP_001004747Link to BLAST:NP_001004747.2

Chromosomal Locations for CCDS 31524.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 56252254 56253222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGGACAAGTTGTCATCAGGTTTGGATATATACAGGAATCCACTGAAGAACAAGACTGAAGTCACCATGT
TTATATTGACAGGCTTCACAGATGATTTTGAGCTGCAAGTCTTCCTATTTTTACTATTTTTTGCAATCTA
TCTCTTTACCTTGATAGGCAATTTAGGGCTGGTTGTGTTGGTCATTGAGGATTCCTGGCTCCACAACCCC
ATGTATTATTTTCTTAGTGTTTTATCATTCTTGGATGCTTGCTATTCTACAGTTGTCACTCCAAAAATGT
TGGTCAATTTCCTGGCAAAAAATAAATCCATTTCATTTATCGGATGTGCAACACAGATGCTTCTTTTTGT
TACTTTTGGAACTACAGAATGTTTTCTCTTGGCTGCAATGGCTTATGATCACTATGTAGCCATCTACAAC
CCTCTCCTGTATTCAGTGAGCATGTCACCCAGAGTCTATGTGCCACTCATCACTGCTTCCTACGTTGCTG
GCATTTTACATGCTACTATACATATAGTGGCTACATTTAGCCTGTCCTTCTGTGGATCCAATGAAATTAG
GCATGTCTTTTGTGATATGCCTCCTCTCCTTGCTATTTCTTGTTCTGACACTCACACAAACCAGCTTCTA
CTCTTCTACTTTGTGGGTTCTATTGAGATAGTCACTATCCTGATTGTCCTCATTTCCTGTGATTTCATTC
TGTTGTCCATTCTGAAGATGCATTCTGCTAAGGGAAGGCAAAAGGCCTTCTCTACATGTGGCTCTCACCT
AACTGGAGTGACAATTTATCATGGAACAATTCTCGTCAGTTATATGAGACCAAGTTCCAGCTATGCTTCA
GACCATGACATCATAGTGTCAATATTTTACACAATTGTGATTCCCAAGTTGAATCCCATCATCTATAGTT
TGAGGAACAAAGAAGTAAAAAAGGCAGTGAAGAAAATGTTGAAATTGGTTTACAAATGA

Translation (322 aa):
MDKLSSGLDIYRNPLKNKTEVTMFILTGFTDDFELQVFLFLLFFAIYLFTLIGNLGLVVLVIEDSWLHNP
MYYFLSVLSFLDACYSTVVTPKMLVNFLAKNKSISFIGCATQMLLFVTFGTTECFLLAAMAYDHYVAIYN
PLLYSVSMSPRVYVPLITASYVAGILHATIHIVATFSLSFCGSNEIRHVFCDMPPLLAISCSDTHTNQLL
LFYFVGSIEIVTILIVLISCDFILLSILKMHSAKGRQKAFSTCGSHLTGVTIYHGTILVSYMRPSSSYAS
DHDIIVSIFYTIVIPKLNPIIYSLRNKEVKKAVKKMLKLVYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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