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Report for CCDS31280.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31280.1 Public Homo sapiens 10 SFR1 24 110 108 CCDS HistoryNCBI Gene:119392Re-query CCDS DB by CCDS ID:31280.1Re-query CCDS DB by GeneID:119392See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31280.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369729.7 ENSP00000358744.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369729.7Link to Ensembl Protein Viewer:ENSP00000358744.3Re-query CCDS DB by Nucleotide ID:ENST00000369729Re-query CCDS DB by Protein ID:ENSP00000358744
Original member Current member NCBI NM_001384829.1 NP_001371758.1 Accepted alive Link to Nucleotide Sequence:NM_001384829.1Link to Protein Sequence:NP_001371758.1Re-query CCDS DB by Nucleotide ID:NM_001384829Re-query CCDS DB by Protein ID:NP_001371758Link to BLAST:NP_001371758.1
Original member Current member NCBI NM_001384830.1 NP_001371759.1 Accepted alive Link to Nucleotide Sequence:NM_001384830.1Link to Protein Sequence:NP_001371759.1Re-query CCDS DB by Nucleotide ID:NM_001384830Re-query CCDS DB by Protein ID:NP_001371759Link to BLAST:NP_001371759.1
Original member Current member NCBI NM_145247.5 NP_660290.3 Accepted alive Link to Nucleotide Sequence:NM_145247.5Link to Protein Sequence:NP_660290.3Re-query CCDS DB by Nucleotide ID:NM_145247Re-query CCDS DB by Protein ID:NP_660290Link to BLAST:NP_660290.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001371758.1 232 Q86XK3-3 232 100% 0 0
NP_001371759.1 232 Q86XK3-3 232 100% 0 0
NP_660290.3 232 Q86XK3-3 232 100% 0 0

Chromosomal Locations for CCDS 31280.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 104122991 104123086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 104123714 104124124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 104125513 104125704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGGAAAGTCCGTCAGACTCAGCTGTGGTTTTACCTAGCACTCCTCAGGCCTCTGCGAATCCATCATCTC
CCTATACAAATAGTTCCCGAAAACAACCTATGAGTGCAACACTTAGAGAAAGATTAAGGAAAACAAGATT
TTCATTTAATTCCTCTTACAATGTGGTGAAACGTCTTAAAGTAGAGAGTGAAGAAAATGATCAGACCTTT
TCAGAGAAACCAGCATCTTCCACAGAGGAAAACTGTTTGGAATTTCAAGAAAGTTTTAAACATATAGACA
GTGAATTTGAAGAAAATACAAATTTGAAAAATACTTTGAAGAATCTCAATGTCTGTGAATCTCAGTCACT
TGATTCTGGATCATGCAGTGCTCTCCAAAATGAGTTTGTGAGTGAGAAGCTTCCTAAACAAAGATTAAAC
GCTGAAAAAGCCAAATTGGTGAAGCAGGTTCAGGAGAAAGAAGACCTTCTTCGGAGGCTAAAACTAGTCA
AAATGTATAGATCAAAGAATGATCTGTCTCAGTTACAGTTGTTAATAAAGAAGTGGAGAAGCTGTAGCCA
GCTCTTGCTTTATGAGTTGCAGTCAGCTGTGTCTGAAGAGAACAAGAAACTAAGCCTTACTCAATTGATA
GACCACTATGGGTTAGATGATAAATTACTACACTATAACAGAAGTGAAGAAGAATTTATAGATGTTTAA

Translation (232 aa):
MESPSDSAVVLPSTPQASANPSSPYTNSSRKQPMSATLRERLRKTRFSFNSSYNVVKRLKVESEENDQTF
SEKPASSTEENCLEFQESFKHIDSEFEENTNLKNTLKNLNVCESQSLDSGSCSALQNEFVSEKLPKQRLN
AEKAKLVKQVQEKEDLLRRLKLVKMYRSKNDLSQLQLLIKKWRSCSQLLLYELQSAVSEENKKLSLTQLI
DHYGLDDKLLHYNRSEEEFIDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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