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Report for CCDS31279.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31279.1 Public Homo sapiens 10 SFR1 24 110 108 CCDS HistoryNCBI Gene:119392Re-query CCDS DB by CCDS ID:31279.1Re-query CCDS DB by GeneID:119392See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31279.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369727.4 ENSP00000358742.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369727.4Link to Ensembl Protein Viewer:ENSP00000358742.3Re-query CCDS DB by Nucleotide ID:ENST00000369727Re-query CCDS DB by Protein ID:ENSP00000358742
Original member Current member NCBI NM_001002759.2 NP_001002759.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001002759.2Link to Protein Sequence:NP_001002759.1Re-query CCDS DB by Nucleotide ID:NM_001002759Re-query CCDS DB by Protein ID:NP_001002759Link to BLAST:NP_001002759.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002759.1 245 Q86XK3-1 245 100% 0 0

Chromosomal Locations for CCDS 31279.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 104122184 104122196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 104122965 104123086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 104123714 104124124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 104125513 104125704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGGCGGAGGGAGAGAAAAACCAAGATTTCACTTTCAAGATGGAAAGTCCGTCAGACTCAGCTGTGGTTT
TACCTAGCACTCCTCAGGCCTCTGCGAATCCATCATCTCCCTATACAAATAGTTCCCGAAAACAACCTAT
GAGTGCAACACTTAGAGAAAGATTAAGGAAAACAAGATTTTCATTTAATTCCTCTTACAATGTGGTGAAA
CGTCTTAAAGTAGAGAGTGAAGAAAATGATCAGACCTTTTCAGAGAAACCAGCATCTTCCACAGAGGAAA
ACTGTTTGGAATTTCAAGAAAGTTTTAAACATATAGACAGTGAATTTGAAGAAAATACAAATTTGAAAAA
TACTTTGAAGAATCTCAATGTCTGTGAATCTCAGTCACTTGATTCTGGATCATGCAGTGCTCTCCAAAAT
GAGTTTGTGAGTGAGAAGCTTCCTAAACAAAGATTAAACGCTGAAAAAGCCAAATTGGTGAAGCAGGTTC
AGGAGAAAGAAGACCTTCTTCGGAGGCTAAAACTAGTCAAAATGTATAGATCAAAGAATGATCTGTCTCA
GTTACAGTTGTTAATAAAGAAGTGGAGAAGCTGTAGCCAGCTCTTGCTTTATGAGTTGCAGTCAGCTGTG
TCTGAAGAGAACAAGAAACTAAGCCTTACTCAATTGATAGACCACTATGGGTTAGATGATAAATTACTAC
ACTATAACAGAAGTGAAGAAGAATTTATAGATGTTTAA

Translation (245 aa):
MAEGEKNQDFTFKMESPSDSAVVLPSTPQASANPSSPYTNSSRKQPMSATLRERLRKTRFSFNSSYNVVK
RLKVESEENDQTFSEKPASSTEENCLEFQESFKHIDSEFEENTNLKNTLKNLNVCESQSLDSGSCSALQN
EFVSEKLPKQRLNAEKAKLVKQVQEKEDLLRRLKLVKMYRSKNDLSQLQLLIKKWRSCSQLLLYELQSAV
SEENKKLSLTQLIDHYGLDDKLLHYNRSEEEFIDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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