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Report for CCDS31269.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31269.1 Public Homo sapiens 10 PDZD7 24 110 108 CCDS HistoryNCBI Gene:79955Re-query CCDS DB by CCDS ID:31269.1Re-query CCDS DB by GeneID:79955See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31269.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370215.7 ENSP00000359234.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370215.7Link to Ensembl Protein Viewer:ENSP00000359234.3Re-query CCDS DB by Nucleotide ID:ENST00000370215Re-query CCDS DB by Protein ID:ENSP00000359234
Original member Current member NCBI NM_024895.5 NP_079171.1 Accepted alive Link to Nucleotide Sequence:NM_024895.5Link to Protein Sequence:NP_079171.1Re-query CCDS DB by Nucleotide ID:NM_024895Re-query CCDS DB by Protein ID:NP_079171Link to BLAST:NP_079171.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079171.1 517 Q9H5P4-1 517 100% 0 0

Chromosomal Locations for CCDS 31269.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 101017584 101017615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101018099 101018296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101018822 101019217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101020618 101020678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101021798 101021945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101022209 101022385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101023436 101023610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101023928 101024068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101029994 101030219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGGCGCAGGGTTTCGCAGTGGGCTTCGACCCACTGGGCCTAGGAGACCTGAGCTCCGGCTCTCTGAGCT
CCCTCTCCTCCCGAGGCCACCTAGGCAGCGACTCAGGCTCCACCGCAACGCGATACCTGCTAAGGAAGCA
ACAACGGCTGCTGAACGGGCCCCCCCGCGGAATCCGAGCCTCATCGCCCATGGGACGCGTCATCCTCATC
AACTCCCCCATCGAAGCCAACAGTGATGAAAGTGACATCATCCATTCAGTCCGGGTGGAGAAGAGTCCAG
CAGGGAGGCTGGGCTTCAGCGTGCGCGGGGGCTCAGAGCATGGCCTGGGCATCTTCGTCAGCAAAGTGGA
GGAAGGCAGCAGTGCAGAGCGGGCTGGCCTGTGCGTGGGGGACAAGATCACGGAGGTGAATGGGCTGAGC
CTGGAGAGCACCACCATGGGTAGCGCCGTAAAGGTGCTGACCAGCAGCAGCCGCCTGCACATGATGGTTC
GGCGCATGGGCCGTGTGCCGGGCATCAAGTTCTCCAAGGAGAAGACCACGTGGGTGGATGTGGTGAATCG
GCGCCTGGTAGTGGAGAAGTGCGGTTCAACACCCTCCGACACCAGCTCAGAAGATGGTGTCCGGCGCATC
GTCCACCTATACACAACCTCCGACGACTTCTGCCTGGGCTTCAACATCCGTGGGGGCAAGGAGTTTGGCC
TGGGCATCTATGTGTCCAAAGTGGACCATGGTGGGCTGGCCGAGGAGAATGGCATCAAGGTGGGGGACCA
GGTCCTGGCAGCCAACGGTGTCAGGTTTGACGACATCAGCCACAGCCAGGCCGTGGAGGTGCTGAAGGGC
CAAACGCACATCATGCTGACCATCAAGGAGACCGGCCGGTATCCTGCCTACAAGGAGATGGTTTCTGAGT
ACTGCTGGCTGGACCGACTGAGCAACGGGGTGCTGCAGCAGCTGTCCCCGGCCTCTGAGAGCAGCTCCAG
CGTCTCTTCGTGCGCCTCCAGCGCCCCCTACAGCTCGGGCTCCCTGCCGTCGGACCGCATGGACATCTGC
CTCGGGCAGGAGGAGCCCGGCAGCCGCGGCCCAGGCTGGGGGCGGGCGGACACAGCCATGCAGACGGAGC
CCGATGCGGGAGGCCGGGTGGAGACCTGGTGCAGCGTGCGGCCCACAGTCATCCTCAGGGACACCGCCAT
CCGCTCGGACGGCCCCCATCCCGGCCGCCGCCTTGACTCTGCGCTCTCTGAGTCTCCCAAGACGGCTTTG
CTGCTGGCCCTCAGCCGACCCCGGCCCCCCATCACGCGCTCCCAGAGCTATCTGACCTTGTGGGAGGAGA
AGCAGCAGCGGAAGAAGGAGAAGTCGGGGTCCCCTGGGGAGAAGGGTGCCCTGCAGCGCTCCAAGACGCT
GATGAACCTCTTCTTCAAGGGAGGGCGGCAGGGGAGGCTAGCGCGGGACGGGCGCAGAGAGGCCTGGACA
CTGGACAGCGGGAGCCTGGCCAAAACTTACCCTCGCCTGGACATAGAGAAAGAGATGGGGGTTTCACCCT
GTTGCCCAGGCTAG

Translation (517 aa):
MAQGFAVGFDPLGLGDLSSGSLSSLSSRGHLGSDSGSTATRYLLRKQQRLLNGPPRGIRASSPMGRVILI
NSPIEANSDESDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLS
LESTTMGSAVKVLTSSSRLHMMVRRMGRVPGIKFSKEKTTWVDVVNRRLVVEKCGSTPSDTSSEDGVRRI
VHLYTTSDDFCLGFNIRGGKEFGLGIYVSKVDHGGLAEENGIKVGDQVLAANGVRFDDISHSQAVEVLKG
QTHIMLTIKETGRYPAYKEMVSEYCWLDRLSNGVLQQLSPASESSSSVSSCASSAPYSSGSLPSDRMDIC
LGQEEPGSRGPGWGRADTAMQTEPDAGGRVETWCSVRPTVILRDTAIRSDGPHPGRRLDSALSESPKTAL
LLALSRPRPPITRSQSYLTLWEEKQQRKKEKSGSPGEKGALQRSKTLMNLFFKGGRQGRLARDGRREAWT
LDSGSLAKTYPRLDIEKEMGVSPCCPG


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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