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Report for CCDS31242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31242.1 Public Homo sapiens 10 IFIT1B 24 110 108 CCDS HistoryNCBI Gene:439996Re-query CCDS DB by CCDS ID:31242.1Re-query CCDS DB by GeneID:439996See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31242.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371809.3 ENSP00000360874.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371809.3Link to Ensembl Protein Viewer:ENSP00000360874.3Re-query CCDS DB by Nucleotide ID:ENST00000371809Re-query CCDS DB by Protein ID:ENSP00000360874
Original member Current member NCBI NM_001010987.2 NP_001010987.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001010987.2Link to Protein Sequence:NP_001010987.1Re-query CCDS DB by Nucleotide ID:NM_001010987Re-query CCDS DB by Protein ID:NP_001010987Link to BLAST:NP_001010987.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010987.1 474 Q5T764 474 100% 0 0

Chromosomal Locations for CCDS 31242.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 89378136 89378140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 89383319 89384738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGAGTGAAGAATCTGATGGAAAGCTTATTGAAGACAGCCTGATTCAGCTGAGATGTCACTTTACATGGA
AGTTGTTAATTGAAGCCCCTGAAATTCCTGATTTAGAAAACAGGATCTGGGAAGAGATTCAGTTCCTGGA
CACCAAATACAATGTGGGAATACACAACCTACTAGCCTATGTGAAACACCTGAAAGGCCAGAATGAGGAA
GCCCTGGTCAGCTTGAAAAAGGCTGAAGACTTAATTCAGAAAGAACATGCCAACCAAGCAGATATTAGAA
GTCTGGTGACCTGGGGCAACTTTGCCTGGGTGTATTACCACATGGGCAGATTGGCAGAAGCCCAGACTTA
CCTGGACAAGGTGGAGAACACTTGCAAGAAGTTTGCAAATCCTTCCCGCTATAGAATGGAGTGTCCAGAG
GTGGACTGTGAGGAAGGATGGGCCTTGGCGAAGTGTGGTGGAAAGAATTATGAACGGGCCAAGACCTGCT
TTGAAAAGGCTCTGGAAGGGAACCCTGAAAACCCTGAATTCAATACTGGGTACGCAATCACCGTCTATCG
CCTGGATAAATTTAACACAGCATCAGGGAGGAATAAGGCATTTTCTCTGCACGTCCTAAAACGAGCTGTC
AGGCTAAATCCAGATGATGTATATATTAGGGTTCTCCTTGCCCTGAAGCTTCAGGATGAAGGACAGGAAG
CTGAAGGAGAAAAGTACATTGAAGAAGCTCTGACCAGTATATCTTCACAGGCCTATGTCTTTCAATATGC
AGCCAAGTTTTATCGAAGAAAAGGGTCTGTGGATAAAGCTCTTGAGCTCTTAAAAATGGCCTTGGAGACA
ACACCCACTTCTGCCTTCCTGCATCACCAAATGGGGCTTTGCTACAGGGCACAAATGATCCAAATCAAGG
AAGCTACAAACTGGCAGCCTAGAGGGCAAGATAGGGAAACTGTGGACAGATTGGTTCAATTGGCTATATG
CAAATTTGAAAAGACTATAATGTTAAAGCGAACATTTGAGATGGCCTATGTTGACCTGGCTGAAACGTAT
GCAGAAATAGGCCACCACAGAAAGGCTGAGGAACATTTTCAGAAAGGGTTACGCATGAAGATCTTTGAAG
ATCAGCTAAAGCAAGAGATTCATTACCACTACGGCCGTTTCCAAGAACATCATGGGAAATCTCAAGATAA
AGCAATTACCCATTATTTAAAAGGTTTGAAAATAGAAAAAATGTCCCATTCCAGGGAAAAACTTCTCAAT
GCTTTAGAGAAATTGGCTAAAAGATGTATTCACCAGAATGTACGGGTTGTGGAAAGTGTCAGCCTCCTTG
GGCTTATCCACAAATTGAAAGGAGAAGTAAGTGATGCTTTGCTGTGCTATGAGAGGGCTCTGAGGCTGGC
TGCTGACCTGAACCCTATATTTTAA

Translation (474 aa):
MSEESDGKLIEDSLIQLRCHFTWKLLIEAPEIPDLENRIWEEIQFLDTKYNVGIHNLLAYVKHLKGQNEE
ALVSLKKAEDLIQKEHANQADIRSLVTWGNFAWVYYHMGRLAEAQTYLDKVENTCKKFANPSRYRMECPE
VDCEEGWALAKCGGKNYERAKTCFEKALEGNPENPEFNTGYAITVYRLDKFNTASGRNKAFSLHVLKRAV
RLNPDDVYIRVLLALKLQDEGQEAEGEKYIEEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMALET
TPTSAFLHHQMGLCYRAQMIQIKEATNWQPRGQDRETVDRLVQLAICKFEKTIMLKRTFEMAYVDLAETY
AEIGHHRKAEEHFQKGLRMKIFEDQLKQEIHYHYGRFQEHHGKSQDKAITHYLKGLKIEKMSHSREKLLN
ALEKLAKRCIHQNVRVVESVSLLGLIHKLKGEVSDALLCYERALRLAADLNPIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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