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Report for CCDS31080.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31080.1 Public Homo sapiens 1 COX20 24 110 108 CCDS HistoryNCBI Gene:116228Re-query CCDS DB by CCDS ID:31080.1Re-query CCDS DB by GeneID:116228See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31080.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000411948.7 ENSP00000406327.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000411948.7Link to Ensembl Protein Viewer:ENSP00000406327.2Re-query CCDS DB by Nucleotide ID:ENST00000411948Re-query CCDS DB by Protein ID:ENSP00000406327
Original member Current member NCBI NM_001312871.1 NP_001299800.1 Accepted alive Link to Nucleotide Sequence:NM_001312871.1Link to Protein Sequence:NP_001299800.1Re-query CCDS DB by Nucleotide ID:NM_001312871Re-query CCDS DB by Protein ID:NP_001299800Link to BLAST:NP_001299800.1
Original member Current member NCBI NM_198076.6 NP_932342.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198076.6Link to Protein Sequence:NP_932342.1Re-query CCDS DB by Nucleotide ID:NM_198076Re-query CCDS DB by Protein ID:NP_932342Link to BLAST:NP_932342.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001299800.1 118 Q5RI15-1 118 100% 0 0
NP_932342.1 118 Q5RI15-1 118 100% 0 0

Chromosomal Locations for CCDS 31080.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 244835715 244835756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244841944 244842058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244842195 244842258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244843041 244843176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (357 nt):
ATGGCCGCCCCGCCGGAGCCCGGTGAGCCCGAGGAGAGGAAGTCCCTTAAGCTCCTAGGATTTTTAGATG
TTGAAAATACTCCCTGCGCCCGGCATTCAATATTGTATGGTTCATTAGGATCTGTTGTGGCTGGCTTTGG
ACATTTTTTGTTCACTAGTAGAATTAGAAGATCATGTGATGTTGGAGTAGGAGGGTTTATCTTGGTGACT
TTGGGATGCTGGTTTCATTGTAGGTATAATTATGCAAAGCAAAGAATCCAGGAAAGAATTGCCAGAGAAG
AAATTAAAAAGAAGATATTATATGAAGGTACCCACCTCGATCCTGAAAGAAAACACAACGGCAGCAGCAG
CAATTGA

Translation (118 aa):
MAAPPEPGEPEERKSLKLLGFLDVENTPCARHSILYGSLGSVVAGFGHFLFTSRIRRSCDVGVGGFILVT
LGCWFHCRYNYAKQRIQERIAREEIKKKILYEGTHLDPERKHNGSSSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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