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Report for CCDS309.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
309.1 Public Homo sapiens 1 FAM76A 24 110 108 CCDS HistoryNCBI Gene:199870Re-query CCDS DB by CCDS ID:309.1Re-query CCDS DB by GeneID:199870See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 309.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373954.11 ENSP00000363065.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373954.11Link to Ensembl Protein Viewer:ENSP00000363065.5Re-query CCDS DB by Nucleotide ID:ENST00000373954Re-query CCDS DB by Protein ID:ENSP00000363065
Original member Current member NCBI NM_152660.3 NP_689873.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152660.3Link to Protein Sequence:NP_689873.1Re-query CCDS DB by Nucleotide ID:NM_152660Re-query CCDS DB by Protein ID:NP_689873Link to BLAST:NP_689873.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689873.1 307 Q8TAV0-1 307 100% 0 0

Chromosomal Locations for CCDS 309.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 27726081 27726161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27727472 27727536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27732603 27732657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27734031 27734183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27744654 27744811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27749068 27749154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27755195 27755330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27759526 27759627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27760495 27760581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGGCGGCGCTCTACGCCTGCACCAAGTGCCACCAGCGCTTCCCCTTCGAGGCGCTGTCTCAGGGGCAGC
AGCTGTGCAAGGAATGTCGGATTGCACACCCTGTTGTGAAGTGCACCTACTGCAGGACTGAGTACCAGCA
GGAGAGTAAAACCAATACAATATGCAAGAAATGTGCTCAGAACGTGCAGTTGTATGGAACGCCCAAACCT
TGTCAGTATTGCAACATAATTGCAGCATTTATTGGGAATAAATGCCAGCGCTGCACAAATTCAGAAAAGA
AGTATGGACCACCCTATTCTTGTGAACAGTGCAAGCAGCAGTGTGCATTTGACAGGAAAGATGATAGAAA
GAAGGTAGATGGGAAATTGCTGTGCTGGCTGTGCACACTTTCATACAAACGGGTCCTTCAGAAGACCAAA
GAGCAGAGGAAACACCTGAGTAGCTCTTCTCGTGCTGGCCACCAGGAGAAGGAGCAGTATAGTCGCCTGA
GTGGTGGTGGCCATTATAACAGCCAGAAAACACTTTCTACATCTTCAATTCAAAATGAAATCCCAAAGAA
AAAGTCCAAGTTTGAGTCAATCACAACTAATGGAGACAGCTTCTCCCCAGACCTGGCTCTGGACTCACCA
GGCACTGACCACTTTGTCATCATTGCCCAACTGAAGGAAGAAGTGGCTACCCTGAAGAAGATGTTGCATC
AAAAGGATCAAATGATTTTAGAGAAAGAGAAGAAGATTACAGAGTTGAAGGCTGATTTTCAGTACCAGGA
ATCGCAGATGAGAGCCAAAATGAACCAGATGGAGAAAACCCACAAAGAAGTCACAGAACAACTGCAGGCC
AAAAACCGAGAGCTCCTGAAGCAGGCAGCTGCTTTGTCCAAGAGCAAGAAGTCAGAGAAGTCAGGAGCTA
TAACCTCTCCATGA

Translation (307 aa):
MAALYACTKCHQRFPFEALSQGQQLCKECRIAHPVVKCTYCRTEYQQESKTNTICKKCAQNVQLYGTPKP
CQYCNIIAAFIGNKCQRCTNSEKKYGPPYSCEQCKQQCAFDRKDDRKKVDGKLLCWLCTLSYKRVLQKTK
EQRKHLSSSSRAGHQEKEQYSRLSGGGHYNSQKTLSTSSIQNEIPKKKSKFESITTNGDSFSPDLALDSP
GTDHFVIIAQLKEEVATLKKMLHQKDQMILEKEKKITELKADFQYQESQMRAKMNQMEKTHKEVTEQLQA
KNRELLKQAAALSKSKKSEKSGAITSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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