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Report for CCDS30872.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30872.1 Public Homo sapiens 1 S100A7A 24 110 108 CCDS HistoryNCBI Gene:338324Re-query CCDS DB by CCDS ID:30872.1Re-query CCDS DB by GeneID:338324See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30872.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329256.2 ENSP00000329008.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000329256.2Link to Ensembl Protein Viewer:ENSP00000329008.2Re-query CCDS DB by Nucleotide ID:ENST00000329256Re-query CCDS DB by Protein ID:ENSP00000329008
Original member Current member EBI ENST00000368728.2 ENSP00000357717.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368728.2Link to Ensembl Protein Viewer:ENSP00000357717.1Re-query CCDS DB by Nucleotide ID:ENST00000368728Re-query CCDS DB by Protein ID:ENSP00000357717
Original member Current member EBI ENST00000368729.9 ENSP00000357718.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368729.9Link to Ensembl Protein Viewer:ENSP00000357718.3Re-query CCDS DB by Nucleotide ID:ENST00000368729Re-query CCDS DB by Protein ID:ENSP00000357718
Original member Current member NCBI NM_176823.4 NP_789793.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_176823.4Link to Protein Sequence:NP_789793.1Re-query CCDS DB by Nucleotide ID:NM_176823Re-query CCDS DB by Protein ID:NP_789793Link to BLAST:NP_789793.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_789793.1 101 Q86SG5 101 100% 0 0

Chromosomal Locations for CCDS 30872.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 153418083 153418223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153419145 153419309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (306 nt):
ATGAGCAACACTCAAGCTGAGAGGTCCATAATAGGCATGATCGACATGTTTCACAAATACACCGGACGTG
ATGGCAAGATTGAGAAGCCAAGCCTGCTGACGATGATGAAGGAGAACTTCCCCAATTTCCTCAGTGCCTG
TGACAAAAAGGGCATACATTACCTCGCCACTGTCTTTGAGAAAAAGGACAAGAATGAGGATAAGAAGATT
GATTTTTCTGAGTTTCTGTCCTTGCTGGGAGACATAGCCGCAGACTACCACAAGCAGAGCCATGGAGCGG
CGCCCTGTTCTGGGGGAAGCCAGTGA

Translation (101 aa):
MSNTQAERSIIGMIDMFHKYTGRDGKIEKPSLLTMMKENFPNFLSACDKKGIHYLATVFEKKDKNEDKKI
DFSEFLSLLGDIAADYHKQSHGAAPCSGGSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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