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Report for CCDS30798.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30798.1 Public Homo sapiens 1 STRIP1 24 110 108 CCDS HistoryNCBI Gene:85369Re-query CCDS DB by CCDS ID:30798.1Re-query CCDS DB by GeneID:85369See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30798.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369795.8 ENSP00000358810.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369795.8Link to Ensembl Protein Viewer:ENSP00000358810.3Re-query CCDS DB by Nucleotide ID:ENST00000369795Re-query CCDS DB by Protein ID:ENSP00000358810
Original member Current member NCBI NM_033088.4 NP_149079.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033088.4Link to Protein Sequence:NP_149079.2Re-query CCDS DB by Nucleotide ID:NM_033088Re-query CCDS DB by Protein ID:NP_149079Link to BLAST:NP_149079.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149079.2 837 Q5VSL9-1 837 100% 0 0

Chromosomal Locations for CCDS 30798.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 110034638 110034817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110037891 110037960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110038683 110038757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110039172 110039306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110039395 110039515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110040635 110040703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110041536 110041642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110041734 110041861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110043088 110043270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110043639 110043856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110044840 110044905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110045015 110045078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110046680 110046751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110047542 110047616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110047772 110047869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110049112 110049238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110049460 110049560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110050343 110050409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110050956 110051060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110051683 110051887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110053665 110053912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2514 nt):
ATGGAGCCGGCAGTCGGCGGTCCGGGCCCACTGATCGTGAACAACAAACAGCCCCAGCCCCCGCCACCTC
CGCCGCCGGCAGCCGCACAGCCACCACCCGGGGCACCGCGGGCCGCCGCGGGCCTCCTGCCTGGGGGCAA
AGCCCGCGAGTTCAACCGCAACCAGCGCAAAGACTCAGAGGGCTATTCGGAGTCACCAGACCTGGAGTTT
GAGTATGCTGACACAGACAAGTGGGCTGCAGAGCTCTCGGAGCTTTACAGCTACACGGAAGGGCCAGAAT
TCCTGATGAATCGAAAATGCTTTGAGGAGGACTTCCGGATCCATGTGACAGACAAGAAGTGGACTGAGCT
GGATACCAACCAGCACCGGACCCATGCCATGAGGCTCCTGGATGGCTTGGAAGTCACTGCCAGGGAGAAG
AGACTCAAGGTGGCTCGAGCAATTCTCTATGTTGCTCAAGGCACGTTTGGGGAGTGCAGCTCGGAGGCAG
AGGTGCAGTCCTGGATGCGCTACAACATCTTTCTCCTCCTGGAGGTGGGCACGTTCAATGCTTTGGTGGA
GCTTCTGAACATGGAAATAGACAACAGTGCCGCCTGCAGCAGTGCTGTGAGGAAGCCTGCCATCTCCCTG
GCTGACAGCACAGACCTCAGGGTCCTGCTCAACATCATGTACCTGATAGTGGAGACCGTTCATCAGGAGT
GTGAGGGTGACAAGGCTGAGTGGAGGACCATGCGGCAGACCTTCAGAGCCGAGCTGGGCTCCCCGCTGTA
CAACAATGAGCCATTTGCCATCATGCTGTTTGGGATGGTGACCAAATTTTGCAGTGGTCACGCCCCTCAC
TTTCCCATGAAGAAAGTTCTCTTGCTGCTCTGGAAGACAGTATTGTGCACGCTAGGCGGCTTTGAGGAGC
TGCAGAGCATGAAGGCTGAGAAGCGCAGCATCCTGGGCCTCCCCCCGCTTCCTGAGGACAGCATCAAAGT
GATTCGCAACATGAGAGCAGCCTCTCCACCAGCATCTGCTTCAGACTTGATTGAGCAGCAGCAGAAACGG
GGCCGCCGAGAGCACAAGGCTCTGATAAAGCAGGACAACCTAGATGCCTTCAACGAGCGGGATCCCTACA
AGGCTGATGACTCTCGAGAAGAGGAAGAGGAGAATGATGATGACAACAGTCTGGAGGGGGAGACGTTTCC
CCTGGAACGGGATGAAGTGATGCCTCCCCCGCTACAGCACCCACAGACTGACAGGCTGACTTGCCCCAAA
GGGCTCCCGTGGGCTCCCAAGGTCAGAGAGAAAGACATTGAGATGTTCCTTGAGTCCAGCCGCAGCAAAT
TTATAGGTTACACTCTAGGCAGTGACACGAACACAGTGGTGGGGCTGCCCAGGCCAATCCACGAAAGCAT
CAAGACTCTGAAACAGCACAAGTACACGTCGATTGCAGAGGTCCAGGCACAGATGGAGGAGGAATACCTC
CGCTCCCCTCTCTCAGGGGGAGAAGAAGAAGTTGAGCAAGTCCCTGCAGAAACCCTCTACCAAGGCTTGC
TCCCCAGCCTGCCTCAGTATATGATTGCCCTCCTGAAGATCCTGTTGGCTGCAGCACCCACCTCAAAAGC
CAAAACAGACTCAATCAACATCCTAGCGGACGTCTTGCCTGAGGAGATGCCCACCACAGTGTTGCAGAGC
ATGAAGCTGGGGGTGGATGTAAACCGCCACAAAGAGGTCATTGTTAAGGCCATTTCTGCTGTCCTGCTGC
TGCTGCTCAAGCACTTTAAGTTGAACCATGTCTACCAGTTTGAATACATGGCCCAGCACCTGGTGTTTGC
CAACTGCATTCCTTTGATCCTAAAGTTCTTCAATCAAAACATCATGTCCTACATCACTGCCAAGAACAGC
ATTTCTGTCCTGGATTACCCTCACTGCGTGGTGCATGAGCTGCCAGAGCTGACGGCGGAGAGTTTGGAAG
CAGGTGACAGTAACCAATTTTGCTGGAGGAACCTCTTTTCTTGTATCAATCTGCTTCGGATCTTGAACAA
GCTGACAAAGTGGAAGCATTCAAGGACAATGATGCTGGTGGTGTTCAAGTCAGCCCCCATCTTGAAGCGG
GCCCTAAAGGTGAAACAAGCCATGATGCAGCTCTATGTGCTGAAGCTGCTCAAGGTACAGACCAAATACT
TGGGGCGGCAGTGGCGAAAGAGCAACATGAAGACCATGTCTGCCATCTACCAGAAGGTGCGGCATCGGCT
GAACGACGACTGGGCATACGGCAATGATCTTGATGCCCGGCCTTGGGACTTCCAGGCAGAGGAGTGTGCC
CTTCGTGCCAACATTGAACGCTTCAACGCCCGGCGCTATGACCGGGCCCACAGCAACCCTGACTTCCTGC
CAGTGGACAACTGCCTGCAGAGTGTCCTGGGCCAACGGGTGGACCTCCCTGAGGACTTTCAGATGAACTA
TGACCTCTGGTTAGAAAGGGAGGTCTTCTCCAAGCCCATTTCCTGGGAAGAGCTGCTGCAGTGA

Translation (837 aa):
MEPAVGGPGPLIVNNKQPQPPPPPPPAAAQPPPGAPRAAAGLLPGGKAREFNRNQRKDSEGYSESPDLEF
EYADTDKWAAELSELYSYTEGPEFLMNRKCFEEDFRIHVTDKKWTELDTNQHRTHAMRLLDGLEVTAREK
RLKVARAILYVAQGTFGECSSEAEVQSWMRYNIFLLLEVGTFNALVELLNMEIDNSAACSSAVRKPAISL
ADSTDLRVLLNIMYLIVETVHQECEGDKAEWRTMRQTFRAELGSPLYNNEPFAIMLFGMVTKFCSGHAPH
FPMKKVLLLLWKTVLCTLGGFEELQSMKAEKRSILGLPPLPEDSIKVIRNMRAASPPASASDLIEQQQKR
GRREHKALIKQDNLDAFNERDPYKADDSREEEEENDDDNSLEGETFPLERDEVMPPPLQHPQTDRLTCPK
GLPWAPKVREKDIEMFLESSRSKFIGYTLGSDTNTVVGLPRPIHESIKTLKQHKYTSIAEVQAQMEEEYL
RSPLSGGEEEVEQVPAETLYQGLLPSLPQYMIALLKILLAAAPTSKAKTDSINILADVLPEEMPTTVLQS
MKLGVDVNRHKEVIVKAISAVLLLLLKHFKLNHVYQFEYMAQHLVFANCIPLILKFFNQNIMSYITAKNS
ISVLDYPHCVVHELPELTAESLEAGDSNQFCWRNLFSCINLLRILNKLTKWKHSRTMMLVVFKSAPILKR
ALKVKQAMMQLYVLKLLKVQTKYLGRQWRKSNMKTMSAIYQKVRHRLNDDWAYGNDLDARPWDFQAEECA
LRANIERFNARRYDRAHSNPDFLPVDNCLQSVLGQRVDLPEDFQMNYDLWLEREVFSKPISWEELLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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