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Report for CCDS30613.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30613.1 Public Homo sapiens 1 FBXO42 24 110 108 CCDS HistoryNCBI Gene:54455Re-query CCDS DB by CCDS ID:30613.1Re-query CCDS DB by GeneID:54455See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30613.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375592.8 ENSP00000364742.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375592.8Link to Ensembl Protein Viewer:ENSP00000364742.3Re-query CCDS DB by Nucleotide ID:ENST00000375592Re-query CCDS DB by Protein ID:ENSP00000364742
Original member Current member NCBI NM_018994.3 NP_061867.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018994.3Link to Protein Sequence:NP_061867.1Re-query CCDS DB by Nucleotide ID:NM_018994Re-query CCDS DB by Protein ID:NP_061867Link to BLAST:NP_061867.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061867.1 717 Q6P3S6 717 100% 0 0

Chromosomal Locations for CCDS 30613.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 16250670 16251785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16252288 16252404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16253096 16253152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16253635 16253731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16255711 16255821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16256606 16256759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16294783 16294917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16305803 16305919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16315169 16315418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2154 nt):
ATGGCCAGCTCCTCGGACAGTGAAGATGACAGTTTCATGGCTGTGGACCAGGAAGAAACTGTGCTGGAAG
GGACAATGGATCAAGATGAGGAGCCCCACCCAGTATTGGAGGCTGAGGAGACTAGACATAATAGGTCCAT
GTCGGAGCTGCCAGAAGAGGTTTTGGAGTATATCCTGTCCTTTCTCTCACCGTATCAGGAACACAAAACT
GCGGCCCTTGTCTGCAAACAGTGGTATCGACTTATCAAAGGTGTAGCCCATCAGTGTTATCATGGTTTCA
TGAAGGCTGTCCAGGAAGGAAACATTCAGTGGGAGAGCCGTACCTATCCTTATCCTGGAACCCCAATCAC
TCAGCGCTTCTCGCACAGTGCATGCTATTATGATGCTAATCAGTCTATGTATGTGTTTGGAGGCTGTACC
CAGAGCAGCTGCAATGCTGCTTTCAATGACCTCTGGAGACTTGACCTAAACAGCAAAGAGTGGATCCGAC
CTTTGGCTTCAGGGTCCTATCCTTCCCCCAAAGCTGGAGCAACTCTGGTCGTGTACAAGGACTTGCTAGT
GCTGTTTGGTGGCTGGACGCGGCCAAGCCCTTATCCCCTACACCAGCCAGAGAGATTCTTTGATGAAATA
CACACTTACTCACCCTCTAAAAATTGGTGGAACTGCATTGTGACAACCCATGGGCCACCTCCCATGGCTG
GCCACTCCTCCTGTGTGATAGATGATAAAATGATTGTCTTTGGTGGCTCTTTAGGATCCCGGCAAATGAG
CAATGATGTCTGGGTCCTTGACCTTGAGCAGTGGGCGTGGTCCAAGCCGAACATCTCTGGCCCCAGTCCT
CATCCTCGAGGTGGCCAATCTCAGATTGTCATAGATGATGCAACTATCTTAATCCTCGGAGGGTGTGGCG
GTCCCAATGCTCTATTCAAGGATGCTTGGTTGTTGCACATGCATTCTGGTCCTTGGGCCTGGCAGCCACT
CAAGGTAGAAAATGAAGAGCATGGGGCCCCAGAACTGTGGTGCCATCCAGCTTGCCGGGTGGGACAGTGT
GTGGTGGTCTTCAGCCAGGCTCCTAGTGGGAGAGCCCCACTCAGCCCCAGTTTGAACTCTCGCCCATCAC
CTATCAGTGCCACTCCTCCAGCTCTCGTTCCTGAAACCCGAGAGTACCGCTCTCAGTCTCCAGTAAGAAG
CATGGATGAAGCTCCTTGTGTTAACGGCCGCTGGGGAACACTGAGACCCAGGGCTCAAAGGCAGACTCCT
TCAGGTTCCCGGGAAGGGAGCCTTTCCCCAGCCAGAGGAGACGGCTCTCCTATCCTCAATGGTGGGAGTT
TGTCTCCAGGAACGGCAGCTGTGGGTGGCTCTTCTTTGGACAGTCCTGTACAGGCCATATCTCCAAGTAC
TCCATCTGCTCCTGAAGGATACGACCTGAAAATAGGACTTTCTTTGGCCCCCCGACGAGGATCACTACCA
GATCAGAAAGATCTGAGATTAGGATCCATAGATCTGAATTGGGATCTGAAACCCGCTTCCAGTAGTAATC
CCATGGATGGCATGGACAATAGGACAGTTGGGGGAAGTATGAGACACCCTCCTGAACAGACAAATGGTGT
GCATACCCCACCTCACGTGGCCAGTGCCCTTGCAGGGGCCGTCTCCCCAGGTGCCCTGCGTCGGAGTCTG
GAAGCCATCAAAGCGATGTCCTCCAAAGGCCCCTCGGCCTCTGCAGCACTAAGTCCTCCTCTTGGGTCTT
CTCCAGGCTCTCCTGGGAGCCAGAGTTTGAGCAGTGGAGAAACAGTGCCCATCCCTCGCCCAGGGCCTGC
CCAAGGAGATGGACATTCCTTACCTCCCATTGCTCGCCGCCTGGGCCACCACCCTCCACAGTCCCTAAAT
GTTGGCAAACCCCTATACCAGAGTATGAACTGCAAGCCCATGCAGATGTACGTGCTGGACATTAAAGACA
CCAAGGAGAAGGGGCGGGTCAAATGGAAAGTATTTAATAGCAGTTCTGTGGTTGGACCTCCTGAAACCAG
CCTGCATACCGTGGTACAAGGCAGGGGTGAACTCATCATATTTGGAGGACTCATGGACAAGAAACAGAAT
GTGAAGTACTATCCAAAAACAAACGCCTTGTACTTTGTACGAGCAAAGAGATAA

Translation (717 aa):
MASSSDSEDDSFMAVDQEETVLEGTMDQDEEPHPVLEAEETRHNRSMSELPEEVLEYILSFLSPYQEHKT
AALVCKQWYRLIKGVAHQCYHGFMKAVQEGNIQWESRTYPYPGTPITQRFSHSACYYDANQSMYVFGGCT
QSSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKDLLVLFGGWTRPSPYPLHQPERFFDEI
HTYSPSKNWWNCIVTTHGPPPMAGHSSCVIDDKMIVFGGSLGSRQMSNDVWVLDLEQWAWSKPNISGPSP
HPRGGQSQIVIDDATILILGGCGGPNALFKDAWLLHMHSGPWAWQPLKVENEEHGAPELWCHPACRVGQC
VVVFSQAPSGRAPLSPSLNSRPSPISATPPALVPETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTP
SGSREGSLSPARGDGSPILNGGSLSPGTAAVGGSSLDSPVQAISPSTPSAPEGYDLKIGLSLAPRRGSLP
DQKDLRLGSIDLNWDLKPASSSNPMDGMDNRTVGGSMRHPPEQTNGVHTPPHVASALAGAVSPGALRRSL
EAIKAMSSKGPSASAALSPPLGSSPGSPGSQSLSSGETVPIPRPGPAQGDGHSLPPIARRLGHHPPQSLN
VGKPLYQSMNCKPMQMYVLDIKDTKEKGRVKWKVFNSSSVVGPPETSLHTVVQGRGELIIFGGLMDKKQN
VKYYPKTNALYFVRAKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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