NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS30557.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30557.1 Public Homo sapiens 1 CCNL2 24 110 108 CCDS HistoryNCBI Gene:81669Re-query CCDS DB by CCDS ID:30557.1Re-query CCDS DB by GeneID:81669See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30557.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400809.8 ENSP00000383611.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000400809.8Link to Ensembl Protein Viewer:ENSP00000383611.3Re-query CCDS DB by Nucleotide ID:ENST00000400809Re-query CCDS DB by Protein ID:ENSP00000383611
Original member Current member NCBI NM_030937.6 NP_112199.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030937.6Link to Protein Sequence:NP_112199.2Re-query CCDS DB by Nucleotide ID:NM_030937Re-query CCDS DB by Protein ID:NP_112199Link to BLAST:NP_112199.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112199.2 520 Q96S94-1 520 100% 0 0

Chromosomal Locations for CCDS 30557.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 1387231 1387582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1387777 1387869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1387954 1388065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1390230 1390371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1390459 1390563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1390766 1390865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1393396 1393460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1395394 1395514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1398233 1398342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1398597 1398671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1399019 1399306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGGCGGCGGCGGCGGCGGCGGCTGGTGCTGCAGGGTCGGCAGCTCCCGCGGCAGCGGCCGGCGCCCCGG
GATCTGGGGGCGCACCCTCAGGGTCGCAGGGGGTGCTGATCGGGGACAGGCTGTACTCCGGGGTGCTCAT
CACCTTGGAGAACTGCCTCCTGCCTGACGACAAGCTCCGTTTCACGCCGTCCATGTCGAGCGGCCTCGAC
ACCGACACAGAGACCGACCTCCGCGTGGTGGGCTGCGAGCTCATCCAGGCGGCCGGTATCCTGCTCCGCC
TGCCGCAGGTGGCCATGGCTACCGGGCAGGTGTTGTTCCAGCGGTTCTTTTATACCAAGTCCTTCGTGAA
GCACTCCATGGAGCATGTGTCAATGGCCTGTGTCCACCTGGCTTCCAAGATAGAAGAGGCCCCAAGACGC
ATACGGGACGTCATCAATGTGTTTCACCGCCTTCGACAGCTGAGAGACAAAAAGAAGCCCGTGCCTCTAC
TACTGGATCAAGATTATGTTAATTTAAAGAACCAAATTATAAAGGCGGAAAGACGAGTTCTCAAAGAGTT
GGGTTTCTGCGTCCATGTGAAGCATCCTCATAAGATAATCGTTATGTACCTTCAGGTGTTAGAGTGTGAG
CGTAACCAACACCTGGTCCAGACCTCATGGAATTACATGAACGACAGCCTTCGCACCGACGTCTTCGTGC
GGTTCCAGCCAGAGAGCATCGCCTGTGCCTGCATTTATCTTGCTGCCCGGACGCTGGAGATCCCTTTGCC
CAATCGTCCCCATTGGTTTCTTTTGTTTGGAGCAACTGAAGAAGAAATTCAGGAAATCTGCTTAAAGATC
TTGCAGCTTTATGCTCGGAAAAAGGTTGATCTCACACACCTGGAGGGTGAAGTGGAAAAAAGAAAGCACG
CTATCGAAGAGGCAAAGGCCCAAGCCCGGGGCCTGTTGCCTGGGGGCACACAGGTGCTGGATGGTACCTC
GGGGTTCTCTCCTGCCCCCAAGCTGGTGGAATCCCCCAAAGAAGGTAAAGGGAGCAAGCCTTCCCCACTG
TCTGTGAAGAACACCAAGAGGAGGCTGGAGGGCGCCAAGAAAGCCAAGGCGGACAGCCCCGTGAACGGCT
TGCCAAAGGGGCGAGAGAGTCGGAGTCGGAGCCGGAGCCGTGAGCAGAGCTACTCGAGGTCCCCATCCCG
ATCAGCGTCTCCTAAGAGGAGGAAAAGTGACAGCGGCTCCACATCTGGTGGGTCCAAGTCGCAGAGCCGC
TCCCGGAGCAGGAGTGACTCCCCACCGAGACAGGCCCCCCGCAGCGCTCCCTACAAAGGCTCTGAGATTC
GGGGCTCCCGGAAGTCCAAGGACTGCAAGTACCCCCAGAAGCCACACAAGTCTCGGAGCCGGAGTTCTTC
CCGTTCTCGAAGCAGGTCACGGGAGCGGGCGGATAATCCGGGAAAATACAAGAAGAAAAGTCATTACTAC
AGAGATCAGCGACGAGAGCGCTCGAGGTCGTATGAACGCACAGGCCGTCGCTATGAGCGGGACCACCCTG
GGCACAGCAGGCATCGGAGGTGA

Translation (520 aa):
MAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLIGDRLYSGVLITLENCLLPDDKLRFTPSMSSGLD
TDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRR
IRDVINVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECE
RNQHLVQTSWNYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICLKI
LQLYARKKVDLTHLEGEVEKRKHAIEEAKAQARGLLPGGTQVLDGTSGFSPAPKLVESPKEGKGSKPSPL
SVKNTKRRLEGAKKAKADSPVNGLPKGRESRSRSRSREQSYSRSPSRSASPKRRKSDSGSTSGGSKSQSR
SRSRSDSPPRQAPRSAPYKGSEIRGSRKSKDCKYPQKPHKSRSRSSSRSRSRSRERADNPGKYKKKSHYY
RDQRRERSRSYERTGRRYERDHPGHSRHRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH