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Report for CCDS30542.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30542.1 Public Mus musculus Y Eif2s3y 23 108 98 CCDS HistoryNCBI Gene:26908Re-query CCDS DB by CCDS ID:30542.1Re-query CCDS DB by GeneID:26908See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30542.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091197.3 ENSMUSP00000088736.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091197.3Link to Ensembl Protein Viewer:ENSMUSP00000088736.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000091197Re-query CCDS DB by Protein ID:ENSMUSP00000088736
Original member Current member NCBI NM_012011.2 NP_036141.1 Accepted alive Link to Nucleotide Sequence:NM_012011.2Link to Protein Sequence:NP_036141.1Re-query CCDS DB by Nucleotide ID:NM_012011Re-query CCDS DB by Protein ID:NP_036141Link to BLAST:NP_036141.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036141.1 472 Q9Z0N2 472 100% 0 0

Chromosomal Locations for CCDS 30542.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome Y (NC_000087.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 1010617 1010685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1011260 1011323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1011840 1011967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1012048 1012169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1013379 1013473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1014634 1014792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1016057 1016191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1016590 1016684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1017364 1017508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1019986 1020155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1023302 1023474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1028188 1028251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGGCGGGCGGAGAAGCCGGTGTCACTCTCGGGCAGCCGCATCTTTCTCGTCAGGATCTTGCCACTTTGG
ATGTTACCAAGTTGACTCCGCTTTCACGTGAAATTATCAGCAGACAAGCCACAATTAATATAGGCACAAT
TGGTCATGTTGCTCATGGAAAATCTACAGTTGTAAAAGCCATTTCTGGTGTTCACACTGTCCGATTCAAA
AATGAACTAGAAAGGAATATTACCATAAAACTTGGATATGCTAATGCCAAAATTTATAAGCTTGATGACT
CAAGTTGTCCTCGACCAGAATGTTACAGATCTTGTGGAAGTAGTACACCTGATGAGTTTCCTTCAGATAT
TCCAGGGACCAAAGGAAACTTCAGACTAGTCAGACATGTTTCCTTTGTTGATTGTCCTGGTCATGATATT
TTGATGGCAACTATGCTGAATGGGGCAGCAGTGATGGATGCAGCTCTTCTGTTGATAGCTGGTAATGAAT
CTTGTCCTCAACCTCAGACTTCTGAACACCTGGCTGCCATTGAAATTATGAAGCTAAAACATATTTTGAT
TCTGCAAAATAAAATTGATTTGGTGAAAGAAAGCCAGGCTAAAGAACAGTATGAACAGATACTTGCATTT
GTACAGGGTACAGTAGCCGAAGGAGCTCCTATTATTCCAATTTCTGCTCAGTTAAAATACAATATTGAAG
TTGTATGTGAGTATATAGTAAAGAAAATTCCAGTACCTCTAAGAGACTTTACTTCAGAACCCCGACTTAT
TGTTATTCGGTCTTTTGATGTTAACAAACCTGGCTGTGAAGTTGATGACCTTAAAGGGGGTGTAGCTGGT
GGTAGTATTTTAAAAGGCGTATTAAAGGTGGGACAAGAGATAGAAGTGAGACCTGGTATTGTTTCTAAAG
ACGGAGAAGGGAAGCTTATGTGTAAACCAATCTTTTCCAAGATTGTATCCCTTTTTGCAGAACACAATGA
TCTTCAGTATGCTGCTCCAGGTGGTCTTATTGGAGTTGGAACAAAAATTGACCCAACGTTATGCCGAGCA
GATAGAATGGTTGGGCAGGTCCTTGGTGCTGTTGGAGCATTACCTGAGATATTCACAGAGTTAGAAATTT
CCTACTTCCTACTGAGACGGCTCCTAGGTGTACGTACAGAAGGAGACAAGAAAGCAGCAAAAGTTCAAAA
GCTATCCAAGAATGAAGTACTCATGGTGAACATAGGGTCCTTGTCTACAGGAGGCAGAGTTAGTGCAGTC
AAGGCAGATTTGGGTAAAATTGTTCTAACCAATCCAGTATGCACAGAAGTAGGAGAAAAAATTGCTCTAA
GCCGACGAGTTGAGAAACACTGGCGTTTAATTGGTTGGGGCCAGATAAGAAGAGGCGTGACTATCAAGCC
AACAATAGATGATGAATGA

Translation (472 aa):
MAGGEAGVTLGQPHLSRQDLATLDVTKLTPLSREIISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFK
NELERNITIKLGYANAKIYKLDDSSCPRPECYRSCGSSTPDEFPSDIPGTKGNFRLVRHVSFVDCPGHDI
LMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKEQYEQILAF
VQGTVAEGAPIIPISAQLKYNIEVVCEYIVKKIPVPLRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAG
GSILKGVLKVGQEIEVRPGIVSKDGEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTKIDPTLCRA
DRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAV
KADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLIGWGQIRRGVTIKPTIDDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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