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Report for CCDS30517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30517.1 Public Mus musculus X Cltrn 23 108 98 CCDS HistoryNCBI Gene:57394Re-query CCDS DB by CCDS ID:30517.1Re-query CCDS DB by GeneID:57394See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30517.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015545.9 ENSMUSP00000015545.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015545.9Link to Ensembl Protein Viewer:ENSMUSP00000015545.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000015545Re-query CCDS DB by Protein ID:ENSMUSP00000015545
Original member Current member EBI ENSMUST00000112280.7 ENSMUSP00000107899.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112280.7Link to Ensembl Protein Viewer:ENSMUSP00000107899.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112280Re-query CCDS DB by Protein ID:ENSMUSP00000107899
Original member Current member NCBI NM_020626.2 NP_065651.1 Accepted alive Link to Nucleotide Sequence:NM_020626.2Link to Protein Sequence:NP_065651.1Re-query CCDS DB by Nucleotide ID:NM_020626Re-query CCDS DB by Protein ID:NP_065651Link to BLAST:NP_065651.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065651.1 222 Q9ESG4 222 100% 0 0

Chromosomal Locations for CCDS 30517.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 164090273 164090330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164090689 164090747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164094876 164094961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164105976 164106089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164108325 164108519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 164118196 164118352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (669 nt):
ATGTTGTGGGCGCTCTTTTTCCTGGTGACTACTATTCACGCTGAACTCTGCCATCCAGATGCAGAAAATG
CCTTTAAAGTAAGACTTAGCATCAGAGCAGCTCTTGGAGATAAAGCATATGTCTGGGACACGGATCAAGA
ATACCTCTTCAGAGCAATGGTGGCATTCTCCATGAGAAAAGTTCCCAACAGAGAAGCAACAGAAATTTCC
CATGTCCTGCTTTGCAACATAACCCAGAGGGTGTCGTTCTGGTTTGTGGTCACGGACCCTTCCAACAATT
ATACTCTTCCTGCAGCTGAAGTACAGTCGGCCATAAGAAAGAATAGGAACCGGATCAACAGTGCATTTTT
TCTGGATGACCATACTCTGGAATTTTTAAAAATTCCTTCTACTCTTGCTCCCCCGATGGAGCCATCTGTG
CCCGTCTGGATTATTGTATTCGGTGTGATATTTTGCATTGTTACAGTTGCAATTGCACTACTGGTTCTAT
CTGGAATCCGGCAACGCAGAAGGAACAACAAAGGACCACCTGGAGTGGAAGATGCAGAAGACAAGTGTGA
AAACATCATCACAATAGAAAATGGCATCCCTTGTGATCCCTTGGACATGAAGGGAGGGCACATTAATGAT
GGCTTCTTGACAGAGGATGAGCGCCTCACCCCTCTCTGA

Translation (222 aa):
MLWALFFLVTTIHAELCHPDAENAFKVRLSIRAALGDKAYVWDTDQEYLFRAMVAFSMRKVPNREATEIS
HVLLCNITQRVSFWFVVTDPSNNYTLPAAEVQSAIRKNRNRINSAFFLDDHTLEFLKIPSTLAPPMEPSV
PVWIIVFGVIFCIVTVAIALLVLSGIRQRRRNNKGPPGVEDAEDKCENIITIENGIPCDPLDMKGGHIND
GFLTEDERLTPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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