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Report for CCDS30503.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30503.2 Public Mus musculus X Bclaf3 23 108 98 CCDS HistoryNCBI Gene:382252Re-query CCDS DB by CCDS ID:30503.2Re-query CCDS DB by GeneID:382252See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 30503.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112464.7 ENSMUSP00000108083.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112464.7Link to Ensembl Protein Viewer:ENSMUSP00000108083.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112464Re-query CCDS DB by Protein ID:ENSMUSP00000108083
Original member Current member NCBI NM_001033472.2 NP_001028644.2 Accepted alive Link to Nucleotide Sequence:NM_001033472.2Link to Protein Sequence:NP_001028644.2Re-query CCDS DB by Nucleotide ID:NM_001033472Re-query CCDS DB by Protein ID:NP_001028644Link to BLAST:NP_001028644.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028644.2 752 A2AG58-1 752 100% 0 0

Chromosomal Locations for CCDS 30503.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 159548275 159548315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159551751 159552374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159553244 159553894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159555475 159555650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159557443 159557557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159558335 159558398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159559838 159559953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159566428 159566542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159567919 159568014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159574945 159575097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 159592071 159592178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2259 nt):
ATGGCACGGTCAAGATCCAGATCCCCCAGGTGGAAACAAAGGTCATTATCGCCACAATCTAGAAATTTTG
AATACCATGAGGAAAGACATTTCCATGGGCACTATGACCCTGAATATAGACATGATCAACAAAGACCCTT
TACTTGGAGAATGGATGATGAAAAACATGGACAAAATAAACCAAGGATTCCCCCTCGTGTGAATTCGTAT
CATCGGTCTTATGTAAATAGATCACCTTCTCCAAATGTAAAACCTGTTGAAAAATTTGATACATATAAGC
CTCACCAAGAATATTTTCCTGGCAGAGGAGATGATGACAGACGATCTCAGTATATGCCCACATACACAGA
AAGTGCAGCAACCTACATGGAGCACGAAAGGGATTGTTATATCCCTACAGTGCAAGGAAGGTATACTCCT
GATGATCACAGAGGTAGAGGTAGAGGAAGTGGGAGAGGAGAGAAGCCACCTCAGATGTCACTGGGGAAGC
CACCTAAGATGTCACTGGGGAAGCCACCTCAGATGTCACTGGCAGATTCCTTGAGATTTAAAGAGAAATG
GCATGAAGATGAATTGAGACACCAGAGGGTACAAGAAGAAAGCTACCCTCAGTCACCCAGAAGAGGCTCA
GAAGACTTTGGCACAAGGAACCCTTTTCAAAAGAGGTATCCCGAGGATCATGATTTCAGAAAGTATGGCT
ACACATCAAAAAGACCTACAGATGCAGCAAGGTATGAAAATAGAGATCCAGCCAGAATCCCAAAGTGGAA
GCCTGAGCATTCTTTTCTACCTTTCCAAGAGAAGAAAGAAGAGTGGAGCTTTGGAGCCCAAGGTCACAGA
TATACTGAGAGAGAGTACCCAGAGAGAAGCTCGACAACCAGAGTATCCTACGACTACCGTCACAAACATC
ATAAGCTCTCAGAGAGCGAGCAGGACTTTCCTGATGGCAGATTTCACAAGCACTTAAAGGAAGAAGACAG
AAAATACAGTTCTATAAAAGCTCCTGCAAATAGAGAGTTAGATTGTTTCAGTACTACAAGAGGAAGAGAA
ATTGAGAATGAGCAAATCAATGGACCTTTTTATCTCTACAACAAAAACTCTGTTTCCTATAATCATACAA
ATATAAAGGATGCTGATTTGGAGCCTTGCAATGACAAATGGAAGAAAAAAATTAGTAAAGAAGATTGCAG
AAAAGAGAATGCATCTTTTAGTAAACAGTTTGATACAAGCCCAAAACCTGAAGAGAAATGCTATTCACTT
ATCAAGAAGAAACCACTTTCTGTCAAAGTAGACAGAAACAAGACAGACACATTTAGGTCTACTTCTAGAT
ATTCTGCAGAGAGACAGATATCACATGATTTGGTTGCTATTGGCAAAACAAGTGACAATTTTCATCCAGT
ATTTCAACATCTTGACTCGACTCAGAATCCTGAAAATAAACCTACTGAAGAATTTGCTCAGGAAATCATA
ACACTAATCCACAAAGTTAAAGCAGATAGTTTTGTAACACCTGATATTACTCTAAATGAACGTTTCTCAA
GAATAAAAAACAGACAGGATGCAGATTTCAATCAAACGAAATCAAATTCAGATCCAGAATTTCACAGGCG
AATAGATATGTCTTTGGATGATTTTCAGAATAAATATACGATGGTATATGAACCAGATAAGACTCTGGTC
AAAGTAATAGAACCAAATGATCTACGACATGACATTGAGAGAAGGAGAAAAGAGCGATTACAGAATGAAG
ATGAGAATATTTTTCACATGGCTAGTCCTACAGAGAGGAATCATCAGTCTCCCAGTTTTTCAAAGGTGAA
GACTATTCGTGCTGATGGATTTCAAAAGCCTCCACATTTTATAAAATCAAATTTTAGAAAATTTATTCAG
AAACCTTACATAAACTATACTATGCAGAGAAAAGATGCCATTGATCAGAAGATATTTAGAGTTGAGGAAA
ATCATCAGAACAGAAGAGGCTCTAAAGGATCTTTTAAGAACTTTTTGGGTGGCAGATTCCAGCCTCATTA
TAAATCACACCTGGTACAGAAGAGCATGTATATTCAGGCTAAATACCAGCGCTTACGGTTTGCTGGACCA
AGAGGATTTATTACCAATAAATTCAGAAACAGATTTCTGAGGAAAAAAAAGGAATACCCAGTATTGCCAA
GGACAAACAACCTGGAATTGTTGCAAGTGGAGCCAACCCTATATGAAGACTTAACTGAGCATCTCATTTT
TGTCAGGAATTGGAATTGA

Translation (752 aa):
MARSRSRSPRWKQRSLSPQSRNFEYHEERHFHGHYDPEYRHDQQRPFTWRMDDEKHGQNKPRIPPRVNSY
HRSYVNRSPSPNVKPVEKFDTYKPHQEYFPGRGDDDRRSQYMPTYTESAATYMEHERDCYIPTVQGRYTP
DDHRGRGRGSGRGEKPPQMSLGKPPKMSLGKPPQMSLADSLRFKEKWHEDELRHQRVQEESYPQSPRRGS
EDFGTRNPFQKRYPEDHDFRKYGYTSKRPTDAARYENRDPARIPKWKPEHSFLPFQEKKEEWSFGAQGHR
YTEREYPERSSTTRVSYDYRHKHHKLSESEQDFPDGRFHKHLKEEDRKYSSIKAPANRELDCFSTTRGRE
IENEQINGPFYLYNKNSVSYNHTNIKDADLEPCNDKWKKKISKEDCRKENASFSKQFDTSPKPEEKCYSL
IKKKPLSVKVDRNKTDTFRSTSRYSAERQISHDLVAIGKTSDNFHPVFQHLDSTQNPENKPTEEFAQEII
TLIHKVKADSFVTPDITLNERFSRIKNRQDADFNQTKSNSDPEFHRRIDMSLDDFQNKYTMVYEPDKTLV
KVIEPNDLRHDIERRRKERLQNEDENIFHMASPTERNHQSPSFSKVKTIRADGFQKPPHFIKSNFRKFIQ
KPYINYTMQRKDAIDQKIFRVEENHQNRRGSKGSFKNFLGGRFQPHYKSHLVQKSMYIQAKYQRLRFAGP
RGFITNKFRNRFLRKKKEYPVLPRTNNLELLQVEPTLYEDLTEHLIFVRNWN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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