NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30472.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30472.1 Public Mus musculus X Ribc1 23 108 98 CCDS HistoryNCBI Gene:66611Re-query CCDS DB by CCDS ID:30472.1Re-query CCDS DB by GeneID:66611See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30472.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026288.4 ENSMUSP00000026288.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026288.4Link to Ensembl Protein Viewer:ENSMUSP00000026288.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000026288Re-query CCDS DB by Protein ID:ENSMUSP00000026288
Original member Current member NCBI NM_025660.3 NP_079936.1 Accepted alive Link to Nucleotide Sequence:NM_025660.3Link to Protein Sequence:NP_079936.1Re-query CCDS DB by Nucleotide ID:NM_025660Re-query CCDS DB by Protein ID:NP_079936Link to BLAST:NP_079936.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079936.1 379 Q9D0B8 379 100% 0 0

Chromosomal Locations for CCDS 30472.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 152004729 152004810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152004919 152005313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152005739 152005857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152007216 152007560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152007747 152007828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 152009525 152009641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGTATAAATTAGACCTTGTATCAGATCCCAGGGAGCTGGCAGCCATTGAAGCTAGAAGAAATCGTGAAA
AGGAACGCCAAAGCCGATTCTTCAATGTGCGGAACCGAGTCATGGGGGTGGATGTGGAAGCCCTCAACTA
CCAGGTGGAGGAACGAAAGTTTCGGGAGGCAATAGAGCGAAACAAAGATATCGCTTATGGTACCAAGCAT
GCGCACTATGATCTGGTAGCCCAGATGCTAGAGAAAGAAGAGGCAGAACGAGCATACCGGCTGTCCAAGA
GAGTACAGGATTTTCGGGAACAAAGGCAGCAGCAATACAAGAATGGACATGAATTTGACTTCTGGGATCC
AGACCAATTCCAGGAGTTTCGGGTCCCTTATTATGAGAAGGATGCATACTTTGGCCCAGCCAGCATGCAG
TACTTCTTTGGAGAGGACCTGGAAAGGGCCTCACACGTGAGAATGCAGCAGGAACAGATGAGATACAACC
TGGAAAAACAGCTACAGGAGCAACAGGCAGCCAGAGAAGAGGAGGCCCGAGCAGCTTTGCTCAGTGACCA
ACTGCGCCTAGCTGCTGACACGCGGGCTGCTGAACTGGCTAGGCTGGAGGAATCCTGTCGAGCAGCTATG
AGGACTGCTATGGCCAATGCCAACAAAGCCCAGGCAGCCAAGCAAGCCCTGCAGCAGCGCCGTGAACAGC
AGCGGCAACAGGAGGCCAACCTCACAGAGGTCAAGAAACAAGTCACCAGTGACCTGCTGACTGAGAATCC
TCAAGTTGCCCAAAGAGCCAATGCTCCTCACCGGGTCCTGCCCTATTGTTGGAAGGGGATGAGTGCAGAG
CAGAGAGCTGCCATCAGAAAAACTCAAGAAACACAACGACAAGAAAAAAAGGAACAGCGCCAAGCCGAAA
AGTTAGTGGAAGCTGAGTGGGGAAGGCAAAACAAACGGCTGGCTGAAGCGGCCCTGGAACTGGAAGAACA
GGAGCGGGAACTGTGTGCAGAGTTCCGAAGGGGACTGGGCTCCTTCAACAGGGAGCTAGCTAAGGAGCAG
CAAGCTCAGCAAAATTATCTGAATTCGGTCATCTACACCAATCAACCGACTGCGCACTATTACCTACAGT
TCAACACCAGCAGCCGCTGA

Translation (379 aa):
MYKLDLVSDPRELAAIEARRNREKERQSRFFNVRNRVMGVDVEALNYQVEERKFREAIERNKDIAYGTKH
AHYDLVAQMLEKEEAERAYRLSKRVQDFREQRQQQYKNGHEFDFWDPDQFQEFRVPYYEKDAYFGPASMQ
YFFGEDLERASHVRMQQEQMRYNLEKQLQEQQAAREEEARAALLSDQLRLAADTRAAELARLEESCRAAM
RTAMANANKAQAAKQALQQRREQQRQQEANLTEVKKQVTSDLLTENPQVAQRANAPHRVLPYCWKGMSAE
QRAAIRKTQETQRQEKKEQRQAEKLVEAEWGRQNKRLAEAALELEEQERELCAEFRRGLGSFNRELAKEQ
QAQQNYLNSVIYTNQPTAHYYLQFNTSSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH