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Report for CCDS30470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30470.1 Public Mus musculus X Phf8 23 108 98 CCDS HistoryNCBI Gene:320595Re-query CCDS DB by CCDS ID:30470.1Re-query CCDS DB by GeneID:320595See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30470.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046962.10 ENSMUSP00000041312.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046962.10Link to Ensembl Protein Viewer:ENSMUSP00000041312.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000046962Re-query CCDS DB by Protein ID:ENSMUSP00000041312
Original member Current member EBI ENSMUST00000112662.8 ENSMUSP00000108281.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112662.8Link to Ensembl Protein Viewer:ENSMUSP00000108281.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112662Re-query CCDS DB by Protein ID:ENSMUSP00000108281
Original member Current member NCBI NM_177201.5 NP_796175.1 Accepted alive Link to Nucleotide Sequence:NM_177201.5Link to Protein Sequence:NP_796175.1Re-query CCDS DB by Nucleotide ID:NM_177201Re-query CCDS DB by Protein ID:NP_796175Link to BLAST:NP_796175.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796175.1 795 Q80TJ7-2 795 100% 0 0

Chromosomal Locations for CCDS 30470.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 151522479 151522576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151547395 151547480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151547815 151547923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151550831 151550991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151552486 151552627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151554134 151554320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151555973 151556135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151565372 151565459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151565959 151566065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151567652 151567743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151570342 151570431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151573413 151573516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151597301 151597479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151597900 151597985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151598503 151598636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151599274 151599584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151620864 151620959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 151625192 151625346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2388 nt):
ATGGCCTCGGTGCCTGTGTATTGCCTCTGTCGACTGCCTTATGATGTGACCCGCTTCATGATCGAGTGTG
ACATGTGCCAGGACTGGTTTCACGGCAGTTGTGTTGGTGTTGAGGAGGAGAAGGCTGCTGATATTGATCT
TTACCACTGCCCTAACTGTGAGGTCTTACATGGACCTTCCATTATGAAAAAACGTCGTGGATCTTCCAAA
GGACATGATAATCACAAGGGGAAGCCACTGAAGACTGGAAGCTCTATGTTTATCCGAGAACTTCGGGGCA
GAACTTTTGACAGCTCAGATGAAGTGATTCTGAAGCCCACTGGAAGTCAGCTGACTGTGGAATTCTTGGA
AGAGAATAGCTTCAGCGTGCCTATCCTTGTCTTGAAGAAGGATGGGTTGGGGATGACATTACCCTCTCCA
TCATTCACTGTGAGGGATGTGGAACACTATGTTGGTTCTGACAAAGAGATTGATGTGATTGATGTGGCCC
GCCAGGCTGACTGCAAGATGAAACTCGGTGATTTTGTCAAATACTATTACAGTGGGAAGAGGGAAAAAGT
CCTCAATGTCATTAGTTTGGAATTCTCCGATACCAGGCTTTCAAACCTCGTGGAAACACCCAGGATTGTT
CGCAAGCTGTCATGGGTGGAGAACTTGTGGCCAGAGGAATGTGTCTTTGAGAGACCCAATGTGCAGAAGT
ACTGCCTCATGAGTGTGCGGGATAGCTATACAGATTTTCACATTGACTTTGGTGGGACCTCAGTTTGGTA
CCATGTGCTTAAGGGTGAGAAGATCTTCTACCTGATCCGCCCAACAAATGCTAATCTGACTCTCTTTGAG
TGCTGGAGTAGCTCCTCCAATCAGAACGAGATGTTCTTTGGTGACCAAGTGGAAAAGTGCTACAAGTGTT
CTGTGAAGCAAGGACAAACACTGTTTATTCCTACAGGATGGATACATGCTGTGTTAACACCCGTGGACTG
CTTAGCATTCGGAGGGAACTTCTTACACAGTCTTAACATTGAAATGCAACTCAAGGCTTATGAAATTGAG
AAGAGGCTGAGCACAGCAGACCTTTTCAAGTTTCCCAACTTCGAGACCATCTGTTGGTATGTGGGAAAAC
ATATTCTGGACATCTTTCGAGGCTTACGAGAAAATAGAAGACACCCTGCCTCCTACCTGGTCCATGGTGG
TAAAGCTCTGAACTTGGCATTTAGAGCTTGGACAAAGAAAGAAGCTTTGCCAGACCACGAGGATGAGATC
CCAGAGACAGTGCGGACTGTACAGCTCATTAAAGATCTGGCTAGGGAGATCCGTCTGGTTGAATTCAACA
TGAGTGGTACCAGCTTGAATGATTCAGATGATGACTCAGCAGACATGGACCTTGATGGCAGTGAGAACCC
TCTGGCCCTGTTGATGGCTAATGGCAGTACGAAGAGGATGAAGAGTGTATCCAAATCTCGGAGAGCCAAA
ATTGCAAAGAAGGTAGACAGTGCAAGACTGGTAGCAGAACAGGTCATGGGAGATGAATTTGACTTGGATT
CAGATGATGAGCTGCAGATTGACGAGAGATTGGGAAAGGAAAAGGCGAACCTGTTAATAAGATCAAAATT
TCCCCGGAAGTTGCCCCGTGCAAAACCTTGCTCTGACCCCAACCGAATTCGTGAACCTGGAGAAGTTGAG
TTTGACATTGAGGAGGACTATACCACAGATGAGGACATGGTGGAAGGGGTTGAAAGCAAGCTTGGGAATG
GGAGTGGAGCCGGTGGAATTCTTGATCTACTTAAGGCCAGCAGGCAGGTGGGGGGACCTGACTATGCTGC
CCTCACTGAGGCCCCAGCCTCCCCCAGCACTCAAGAGGCCATCCAGGGCATGTTGTGTATGGCCAACCTG
CAGTCCTCATCATCCTCACCAGCTACCTCCAGTCTGCAGGCTTGGTGGACTGGAGGGCAAGAAAGAAGCA
GCGGGAGCTCCAGCAGTGGCCTGGGCACTGTGTCTAGTAGTCCTGCTTCCCAGCGCACCCCAGGGAAGCG
GCCCATCAAGAGGCCAGCATACTGGAAAAACGAGAGTGAAGAGGAGGAGAATGCCAGTCTTGATGAGCAA
GACAGCTTGGGAGCATGCTTCAAGGATGCTGAGTATATCTATCCATCTCTGGAGTCTGATGATGATGACC
CTGCTTTGAAATCTCGACCCAAGAAAAAGAAGAATTCAGATGATGCTCCATGGAGTCCTAAAGCCCGTGT
GACTCCAACCCTACCCAAGCAGGACCGTCCTGTTCGTGAGGGGACCAGAGTTGCCTCCATTGAGACAGGC
TTGGCTGCAGCAGCTGCAAAGCTTGCCCAGCAGGTAAGAGTTGACACCCAGCTGGTGGCCCTGCTACTGA
TGACTTAG

Translation (795 aa):
MASVPVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSIMKKRRGSSK
GHDNHKGKPLKTGSSMFIRELRGRTFDSSDEVILKPTGSQLTVEFLEENSFSVPILVLKKDGLGMTLPSP
SFTVRDVEHYVGSDKEIDVIDVARQADCKMKLGDFVKYYYSGKREKVLNVISLEFSDTRLSNLVETPRIV
RKLSWVENLWPEECVFERPNVQKYCLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFE
CWSSSSNQNEMFFGDQVEKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIE
KRLSTADLFKFPNFETICWYVGKHILDIFRGLRENRRHPASYLVHGGKALNLAFRAWTKKEALPDHEDEI
PETVRTVQLIKDLAREIRLVEFNMSGTSLNDSDDDSADMDLDGSENPLALLMANGSTKRMKSVSKSRRAK
IAKKVDSARLVAEQVMGDEFDLDSDDELQIDERLGKEKANLLIRSKFPRKLPRAKPCSDPNRIREPGEVE
FDIEEDYTTDEDMVEGVESKLGNGSGAGGILDLLKASRQVGGPDYAALTEAPASPSTQEAIQGMLCMANL
QSSSSSPATSSLQAWWTGGQERSSGSSSSGLGTVSSSPASQRTPGKRPIKRPAYWKNESEEEENASLDEQ
DSLGACFKDAEYIYPSLESDDDDPALKSRPKKKKNSDDAPWSPKARVTPTLPKQDRPVREGTRVASIETG
LAAAAAKLAQQVRVDTQLVALLLMT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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