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Report for CCDS30455.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30455.1 Public Mus musculus X Capn6 23 108 98 CCDS HistoryNCBI Gene:12338Re-query CCDS DB by CCDS ID:30455.1Re-query CCDS DB by GeneID:12338See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30455.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087316.5 ENSMUSP00000084573.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087316.5Link to Ensembl Protein Viewer:ENSMUSP00000084573.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000087316Re-query CCDS DB by Protein ID:ENSMUSP00000084573
Original member Current member NCBI NM_007603.3 NP_031629.3 Accepted alive Link to Nucleotide Sequence:NM_007603.3Link to Protein Sequence:NP_031629.3Re-query CCDS DB by Nucleotide ID:NM_007603Re-query CCDS DB by Protein ID:NP_031629Link to BLAST:NP_031629.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031629.3 641 O35646 641 100% 0 0

Chromosomal Locations for CCDS 30455.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 143803644 143803826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143804357 143804493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143804675 143804796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143805395 143805597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143805763 143805885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143807246 143807432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143807527 143807604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143807841 143808034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143808618 143808810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143809295 143809503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143810845 143810976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143820296 143820460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1926 nt):
ATGGGTCCTCCTCTGAAGCTCTTCAAAAACCAGAAGTACCAAGAACTGAAGCAGGAGTGCATGAAGGATG
GCCGCCTTTTCTGTGACCCAACCTTCCTACCGGAGAATGATTCTCTGTTTTTCAACCGGCTGCTTCCTGG
GAAGGTGGTGTGGAAGCGTCCACAGGACATTTCTGATGACCCCCACCTGATTGTGGGCAACATCAGCAAC
CACCAGCTGATCCAGGGCAGATTGGGGAACAAGGCAATGATCTCTGCATTTTCCTGTTTGGCTGTTCAGG
AGTCACACTGGACAAAGGCAATTCCCAACCACAAGGATCAGGAATGGGATCCTCGAAAGCCAGAGAAATA
CGCTGGAATCTTTCACTTCCGCTTCTGGCATTTTGGAGAATGGACCGAGGTGGTGATTGATGACTTGCTT
CCCACCATCAACGGAGATCTGGTCTTCTCATTCTCCACCTCCATGAATGAGTTTTGGAATGCTCTACTGG
AAAAAGCGTATGCAAAGCTGCTGGGCTGTTATGAGGCTTTGGATGGTCTGACCATCACTGATATCATCAT
GGACTTCACTGGCACACTGGCTGAAATCATTGACATGCAGAAAGGACGATACACTGATCTTGTTGAGGAG
AAGTACAAGCTGTTTGGAGAACTGTACAAAACGTTCACCAAAGGAGGTCTAATTTGCTGCTCCATTGAGT
CTCCCAGCCAGGAGGAACAAGAAGTTGAAACAGACTGGGGACTACTGAAGGGTTATACCTACACCATGAC
TGATATTCGCAAGCTCCGTCTCGGAGAAAGACTTGTGGAAGTCTTCAGTACTGAGAAGCTGTATATGGTT
CGCCTAAGGAACCCATTGGGAAGACAGGAATGGAGTGGCCCCTGGAGTGAAATTTCAGAGGAGTGGCAGC
AACTGACTGTAACAGATCGCAAGAACCTAGGACTTGTTATGTCTGATGATGGAGAATTTTGGATGAGTCT
GGAAGATTTTTGCCACAACTTTCACAAACTGAATGTCTGCCGCAATGTGAATAATCCTGTTTTTGGCCGC
AAGGAGCTGGAATCAGTGGTGGGATGTTGGACTGTGGATGATGACCCTCTGATGAACCGATCAGGAGGTT
GCTATAACAACCGTGATACCTTCTTGCAGAATCCTCAGTACATTTTCACTGTGCCCGAGGATGGCCATAA
AGTCATCATGTCACTGCAACAGAAGGACCTACGCACTTACCGCCGAATGGGAAGACCTGATAATTACATC
ATTGGTTTTGAGCTCTTCAAGGTGGAGATGAACCGAAGGTTCCGTCTTCACCATCTGTATATTCAGGAGC
GTGCTGGGACTTCCACTTATATCGACACCCGTACTGTGTTTCTGAGCAAGTATCTGAAGAAGGGCAGCTA
CGTGCTTGTTCCAACCATGTTCCAACATGGCCGTACCAGTGAATTTCTGCTGAGGATCTTCTCTGAAGTG
CCCGTCCAGCTCAGGGAACTGACCTTGGACATGCCCAAGATGTCTTGCTGGAACCTGGCACGTGGCTACC
CAAAGGTGGTTACCCAGATCACTGTCCACAGTGCTGAGGGCCTGGAGAAGAAGTATGCCAATGAAACTGT
CAATCCATATCTGATCATCAAATGTGGAAAGGAGGAAGTCCGTTCCCCTGTCCAGAAGAATACTGTGCAT
GCCATTTTTGACACGCAGGCCATTTTCTACAGAAGGACCACTGACATTCCTATTATCATCCAGGTGTGGA
ACAGCAGAAAATTCTGTGATCAGTTCCTGGGGCAGGTTACTCTCGATGCTGACCCCAGCGACTGCCGTGA
TCTGAAATCTCTGTACCTGCGTAAGAAGGGTGGTCCTACTGCCAAAGTCAAGCAAGGTCACATCAGCTTC
AAAGTTATCTCTAGCGATGATCTCACTGAGCTCTAA

Translation (641 aa):
MGPPLKLFKNQKYQELKQECMKDGRLFCDPTFLPENDSLFFNRLLPGKVVWKRPQDISDDPHLIVGNISN
HQLIQGRLGNKAMISAFSCLAVQESHWTKAIPNHKDQEWDPRKPEKYAGIFHFRFWHFGEWTEVVIDDLL
PTINGDLVFSFSTSMNEFWNALLEKAYAKLLGCYEALDGLTITDIIMDFTGTLAEIIDMQKGRYTDLVEE
KYKLFGELYKTFTKGGLICCSIESPSQEEQEVETDWGLLKGYTYTMTDIRKLRLGERLVEVFSTEKLYMV
RLRNPLGRQEWSGPWSEISEEWQQLTVTDRKNLGLVMSDDGEFWMSLEDFCHNFHKLNVCRNVNNPVFGR
KELESVVGCWTVDDDPLMNRSGGCYNNRDTFLQNPQYIFTVPEDGHKVIMSLQQKDLRTYRRMGRPDNYI
IGFELFKVEMNRRFRLHHLYIQERAGTSTYIDTRTVFLSKYLKKGSYVLVPTMFQHGRTSEFLLRIFSEV
PVQLRELTLDMPKMSCWNLARGYPKVVTQITVHSAEGLEKKYANETVNPYLIIKCGKEEVRSPVQKNTVH
AIFDTQAIFYRRTTDIPIIIQVWNSRKFCDQFLGQVTLDADPSDCRDLKSLYLRKKGGPTAKVKQGHISF
KVISSDDLTEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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