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Report for CCDS3044.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3044.1 Public Homo sapiens 3 PODXL2 24 110 108 CCDS HistoryNCBI Gene:50512Re-query CCDS DB by CCDS ID:3044.1Re-query CCDS DB by GeneID:50512See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3044.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342480.7 ENSP00000345359.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342480.7Link to Ensembl Protein Viewer:ENSP00000345359.6Re-query CCDS DB by Nucleotide ID:ENST00000342480Re-query CCDS DB by Protein ID:ENSP00000345359
Original member Current member NCBI NM_015720.4 NP_056535.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015720.4Link to Protein Sequence:NP_056535.1Re-query CCDS DB by Nucleotide ID:NM_015720Re-query CCDS DB by Protein ID:NP_056535Link to BLAST:NP_056535.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056535.1 605 Q9NZ53-1 605 100% 0 0

Chromosomal Locations for CCDS 3044.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 127629220 127629289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127639245 127639523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127660378 127661159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127662237 127662311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127668441 127668597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127669141 127669202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127671434 127671613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 127672268 127672480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1818 nt):
ATGGGCCGGCTGCTGCGGGCCGCCCGGCTGCCGCCGCTGCTTTCGCCGCTGCTGCTTCTGCTGGTTGGGG
GAGCGTTCCTGGGTGCCTGTGTGGCTGGGTCTGATGAGCCTGGCCCAGAGGGCCTCACCTCCACCTCCCT
GCTAGACCTCCTGCTGCCCACTGGCTTGGAGCCACTGGACTCAGAGGAGCCTAGTGAGACCATGGGCCTG
GGAGCTGGGCTGGGAGCCCCTGGCTCAGGCTTCCCCAGCGAAGAGAATGAAGAGTCTCGGATTCTGCAGC
CACCACAGTACTTCTGGGAAGAGGAGGAAGAGCTGAATGACTCAAGTCTGGACCTGGGACCCACTGCAGA
TTATGTTTTTCCTGACTTAACTGAGAAGGCAGGTTCCATTGAAGACACCAGCCAGGCTCAAGAGCTGCCA
AACCTCCCCTCTCCCTTGCCCAAGATGAATCTGGTTGAGCCTCCCTGGCATATGCCTCCCAGAGAGGAGG
AAGAAGAGGAAGAGGAAGAGGAGGAGAGGGAGAAGGAAGAGGTAGAGAAACAAGAGGAGGAGGAAGAGGA
GGAGCTGCTCCCTGTGAATGGATCCCAAGAAGAAGCCAAGCCTCAGGTCCGTGACTTTTCTCTCACCAGC
AGCAGCCAGACCCCAGGGGCCACCAAAAGCAGGCATGAAGACTCCGGGGACCAGGCCTCATCAGGTGTGG
AGGTGGAGAGCAGCATGGGGCCCAGCTTGCTGCTGCCTTCAGTCACCCCAACTACAGTGACTCCGGGGGA
CCAGGACTCCACCAGCCAAGAGGCAGAGGCCACAGTGCTGCCAGCTGCAGGGCTTGGGGTAGAGTTCGAG
GCTCCTCAGGAAGCAAGCGAGGAAGCCACTGCAGGAGCAGCTGGTTTGTCTGGCCAGCACGAGGAGGTGC
CGGCCTTGCCTTCATTCCCTCAAACCACAGCTCCCAGTGGGGCCGAGCACCCAGATGAAGATCCCCTTGG
CTCTAGAACCTCAGCCTCTTCCCCACTGGCCCCTGGAGACATGGAACTGACACCTTCCTCTGCTACCTTG
GGACAAGAAGATCTCAACCAGCAGCTCCTAGAAGGGCAGGCAGCTGAAGCTCAATCCAGGATACCCTGGG
ATTCTACGCAGGTGATCTGCAAGGACTGGAGCAATCTGGCTGGGAAAAACTACATCATTCTGAACATGAC
AGAGAACATAGACTGTGAGGTGTTCCGGCAGCACCGGGGGCCACAGCTCCTGGCCCTGGTGGAAGAGGTG
CTGCCCCGCCATGGCAGTGGCCACCATGGGGCCTGGCACATCTCTCTGAGCAAGCCCAGCGAGAAGGAGC
AGCACCTTCTCATGACACTGGTGGGCGAGCAGGGGGTGGTGCCCACTCAAGATGTCCTTTCCATGCTGGG
TGACATCCGCAGGAGCCTGGAGGAGATTGGCATCCAGAACTATTCCACAACCAGCAGCTGCCAGGCGCGG
GCCAGCCAGGTGCGCAGCGACTACGGCACGCTCTTCGTGGTGCTGGTGGTCATTGGGGCCATCTGCATCA
TCATCATTGCGCTTGGCCTGCTCTACAACTGCTGGCAGCGCCGGCTGCCCAAGCTCAAGCACGTGTCGCA
CGGCGAGGAGCTGCGCTTCGTGGAGAACGGCTGCCACGACAACCCCACGCTGGACGTGGCCAGCGACAGC
CAGTCGGAGATGCAGGAGAAGCACCCCAGCCTGAACGGCGGCGGGGCCCTCAACGGCCCGGGGAGCTGGG
GGGCGCTCATGGGGGGCAAGCGGGACCCCGAGGACTCGGACGTGTTCGAGGAGGACACGCACCTGTGA

Translation (605 aa):
MGRLLRAARLPPLLSPLLLLLVGGAFLGACVAGSDEPGPEGLTSTSLLDLLLPTGLEPLDSEEPSETMGL
GAGLGAPGSGFPSEENEESRILQPPQYFWEEEEELNDSSLDLGPTADYVFPDLTEKAGSIEDTSQAQELP
NLPSPLPKMNLVEPPWHMPPREEEEEEEEEEEREKEEVEKQEEEEEEELLPVNGSQEEAKPQVRDFSLTS
SSQTPGATKSRHEDSGDQASSGVEVESSMGPSLLLPSVTPTTVTPGDQDSTSQEAEATVLPAAGLGVEFE
APQEASEEATAGAAGLSGQHEEVPALPSFPQTTAPSGAEHPDEDPLGSRTSASSPLAPGDMELTPSSATL
GQEDLNQQLLEGQAAEAQSRIPWDSTQVICKDWSNLAGKNYIILNMTENIDCEVFRQHRGPQLLALVEEV
LPRHGSGHHGAWHISLSKPSEKEQHLLMTLVGEQGVVPTQDVLSMLGDIRRSLEEIGIQNYSTTSSCQAR
ASQVRSDYGTLFVVLVVIGAICIIIIALGLLYNCWQRRLPKLKHVSHGEELRFVENGCHDNPTLDVASDS
QSEMQEKHPSLNGGGALNGPGSWGALMGGKRDPEDSDVFEEDTHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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