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Report for CCDS30397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30397.1 Public Mus musculus X Hnrnph2 23 108 98 CCDS HistoryNCBI Gene:56258Re-query CCDS DB by CCDS ID:30397.1Re-query CCDS DB by GeneID:56258See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30397.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059297.5 ENSMUSP00000050838.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059297.5Link to Ensembl Protein Viewer:ENSMUSP00000050838.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000059297Re-query CCDS DB by Protein ID:ENSMUSP00000050838
Original member Current member EBI ENSMUST00000074950.10 ENSMUSP00000074483.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074950.10Link to Ensembl Protein Viewer:ENSMUSP00000074483.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000074950Re-query CCDS DB by Protein ID:ENSMUSP00000074483
Original member Current member EBI ENSMUST00000050331.12 ENSMUSP00000108827.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050331.12Link to Ensembl Protein Viewer:ENSMUSP00000108827.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000050331Re-query CCDS DB by Protein ID:ENSMUSP00000108827
Original member Current member EBI ENSMUST00000113202.7 ENSMUSP00000108828.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113202.7Link to Ensembl Protein Viewer:ENSMUSP00000108828.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113202Re-query CCDS DB by Protein ID:ENSMUSP00000108828
Original member Current member EBI ENSMUST00000113203.1 ENSMUSP00000108829.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113203.1Link to Ensembl Protein Viewer:ENSMUSP00000108829.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113203Re-query CCDS DB by Protein ID:ENSMUSP00000108829
Original member Current member NCBI NM_001313716.1 NP_001300645.1 Accepted alive Link to Nucleotide Sequence:NM_001313716.1Link to Protein Sequence:NP_001300645.1Re-query CCDS DB by Nucleotide ID:NM_001313716Re-query CCDS DB by Protein ID:NP_001300645Link to BLAST:NP_001300645.1
Original member Current member NCBI NM_001313717.1 NP_001300646.1 Accepted alive Link to Nucleotide Sequence:NM_001313717.1Link to Protein Sequence:NP_001300646.1Re-query CCDS DB by Nucleotide ID:NM_001313717Re-query CCDS DB by Protein ID:NP_001300646Link to BLAST:NP_001300646.1
Original member Current member NCBI NM_019868.4 NP_063921.1 Accepted alive Link to Nucleotide Sequence:NM_019868.4Link to Protein Sequence:NP_063921.1Re-query CCDS DB by Nucleotide ID:NM_019868Re-query CCDS DB by Protein ID:NP_063921Link to BLAST:NP_063921.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001300645.1 449 P70333 449 100% 0 0
NP_001300646.1 449 P70333 449 100% 0 0
NP_063921.1 449 P70333 449 100% 0 0

Chromosomal Locations for CCDS 30397.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134604908 134606257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGATGCTGAGCACAGAGGGCAGGGAGGGGTTCGTGGTGAAGGTCAGGGGCCTACCCTGGTCCTGCTCAG
CCGAGGAAGTGATGCGCTTCTTCTCTGATTGCAAAATCCAAAATGGCACATCAGGTGTTCGTTTCATCTA
CACCAGAGAAGGCAGACCGAGTGGTGAAGCATTTGTCGAACTTGAATCTGAAGATGAAGTGAAATTGGCT
TTAAAGAAAGACAGAGAAACCATGGGACACAGATATGTTGAAGTATTCAAATCCAACAGTGTTGAAATGG
ATTGGGTGTTAAAGCATACAGGTCCAAATAGTCCTGATACTGCCAATGATGGTTTTGTACGACTCAGAGG
ACTCCCATTTGGCTGTAGCAAGGAAGAAATTGTTCAGTTCTTTTCAGGGTTGGAAATTGTGCCAAATGGG
ATGACACTGCCAGTGGACTTTCAGGGGCGGAGCACAGGGGAAGCTTTTGTGCAGTTTGCTTCACAGGAGA
TAGCTGAGAAGGCCTTAAAGAAACACAAGGAAAGAATAGGGCATAGGTACATCGAAATCTTCAAGAGTAG
CCGAGCTGAAGTCCGAACCCACTATGATCCACCTAGAAAGCTCATGACTATGCAGCGCCCGGGTCCTTAC
GATAGGCCAGGGGCTGGAAGAGGGTATAATAGCATTGGCAGAGGAGCCGGGTTTGAAAGAATGAGGCGGG
GTGCCTATGGTGGAGGGTATGGAGGCTATGATGACTATGGAGGTTATAATGACGGGTATGGTTTTGGGTC
TGATAGATTTGGAAGAGACCTAAACTACTGTTTCTCAGGAATGTCTGATCATAGATATGGAGATGGTGGG
TCCAGTTTCCAGAGCACCACGGGGCACTGTGTACATATGAGGGGGTTACCATACAGAGCCACCGAGAATG
ATATTTACAATTTTTTCTCACCTCTTAATCCCATGAGAGTGCACATTGAAATAGGACCTGATGGAAGAGT
TACTGGTGAGGCAGATGTTGAGTTTGCTACTCATGAAGACGCTGTGGCAGCTATGGCAAAAGATAAAGCA
AATATGCAACACAGATATGTGGAGCTCTTCTTGAATTCTACCGCAGGGACAAGTGGAGGAGCTTATGATC
ATAGCTATGTAGAGCTCTTTTTGAATTCTACAGCAGGGGCAAGTGGTGGTGCTTACGGTAGCCAGATGAT
GGGAGGGATGGGTTTATCCAACCAGTCTAGTTATGGAGGTCCGGCCAGCCAGCAGCTGAGTGGTGGCTAT
GGAGGGGGTTATGGTGGTCAGAGCAGTATGAGTGGATATGACCAAGTTCTTCAGGAAAACTCAAGTGACT
ATCAGTCAAACCTTGCTTAG

Translation (449 aa):
MMLSTEGREGFVVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLA
LKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG
MTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRKLMTMQRPGPY
DRPGAGRGYNSIGRGAGFERMRRGAYGGGYGGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGG
SSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKA
NMQHRYVELFLNSTAGTSGGAYDHSYVELFLNSTAGASGGAYGSQMMGGMGLSNQSSYGGPASQQLSGGY
GGGYGGQSSMSGYDQVLQENSSDYQSNLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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