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Report for CCDS30358.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30358.1 Under review, update Mus musculus X Tex16 23 108 98 CCDS HistoryNCBI Gene:83556Re-query CCDS DB by CCDS ID:30358.1Re-query CCDS DB by GeneID:83556See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 30358.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038546.6 ENSMUSP00000048187.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038546.6Link to Ensembl Protein Viewer:ENSMUSP00000048187.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000038546Re-query CCDS DB by Protein ID:ENSMUSP00000048187
Original member NCBI NM_031382.2 NP_113559.2 Updated not alive Link to Nucleotide Sequence:NM_031382.2Link to Protein Sequence:NP_113559.2Re-query CCDS DB by Nucleotide ID:NM_031382Re-query CCDS DB by Protein ID:NP_113559
Current member NCBI NM_031382.3 NP_113559.3 Pending alive Link to Nucleotide Sequence:NM_031382.3Link to Protein Sequence:NP_113559.3Re-query CCDS DB by Nucleotide ID:NM_031382Re-query CCDS DB by Protein ID:NP_113559Link to BLAST:NP_113559.3

Chromosomal Locations for CCDS 30358.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 112093529 112094375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112098148 112098237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112118776 112121216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112126742 112126783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3420 nt):
ATGGAATCTGAAAAAACAAAGATGGAGAGTGAAAGTTTGTGGATGATCTCTGATTCTGAGAGTTATTCAG
TGGACTCACACACAGAAAAAGGTAGAGCATCAGTATCTAAAATAAATCTGATACAAATTGATGAAACAGA
AAAACCAAGAACTAAGAGATACTTGATGGAGTCTGATTCTGAACCAAGTAATACAGACTCAGATTCAGAA
GGATGTGAGCTAGCCTCAGCAGCTGTGAAATACTTCATAGCTACAAAGACATTTCAGCAGAGCAGTGCTA
GCAGCCAGTTCCCAAAGGATTCATGGTCTGCAAGTAGAACAATAAACTCAGACTCTGAAAGCCCTGTGAT
GTCCTCTGATTCTATGAAATACATGAAGAAAGCTGAAACATGCAAGAGTACCTGTAATTTGGAAAGACTC
AAGGCGGCTCACAAGTCTGAGTCTCTACAGGACTGGTTAGATGCTAAAAGAAAACAATTAGATTCTGATA
ATGCTGGATACTGGGATAGCTCTGGAAAATATCAGTTTAGTTCTATAGTACCTCAAGAGAGCGTTGGAAA
ACGTCAGGGTGACCTTCAAACGTTTCAGCATAGCACTGAAAAAAAGGAAGTAGGATCCAGTTCTGATAAA
CATCAGGCACAATTTGGAAATGAAAGAGATCAAAGTGATCCTAAAAGTAAAAGATACCTCATAAAGACAG
AGACGGGATTAGACAATGAGGGGTTTCAAATGGATGAGGAAAGAGAAGGATGTCTTGTGGAATCTGACTT
TCGTGATTCAGAACGTGAGGCACACCTGCTAGAAGCCCACCGGCTTGGTGCTCGTAAAAAGGAGAATCGT
CCTCCAGGGTTTTGGAGACCCATTATCCTGCCTCCTAAGCTTGCCCAGGATAAGAAAACTGAAGAACAAA
AGTCTGTACAGCAAAAGGATAACAGAGTTTCTAGAATTCAGCTAACAAGATACAAGAGTGAAGACAAAAA
TGTGAGATTCGAAGAGGCATCTTCAAGTCTCAGTGACAAGCCACTCTCGCAAGAAAAGTTAAAGAAAAAG
CACAGCTATAGCTTTTCTCCAGACTCTCCCACATTCACAGATGAAAAGCATCACAGAAAAGCTAGCCTGA
AAATATCTGGCTATAAGCGCCAGTGCAAGGAATATAGATATCCCCATAGTTGTGAAAGTTTGAAGTATCA
AATCAGTCCCATTCCCCTAAGTTCTGAGACTTGCACCTCTAATGTATCATCATTTGTTGACAGCCCAACT
TCTAAAAGTCCTAAGTCTGTCACAAGAAAGAAGTCTCGAAGAAGTATTACATATTCTCCAGAACAGGGAA
GTCAAAAATGTACTAGATGTTTTATGGAAATCAGTAACTCATCTTATCATAAATGCCTCATAAATTCTGA
TGATTCTGACTCAGACTCTCCATTACATGGCCAGATTTCCTCACATTCTAAATATTCTCTGCGCTCTAAA
ACTATCAGACACTTCAAGACTTCTCGAAATCGCCCTTTATCTCAATCCCTGGATCCTCAGCATTCTGTGG
TCAGCCGCTGTTCTCTGCACAGGGAAGATTCTAAACATTCTATAGATTCCACCTCTTATTTACATTGTGA
AAGTTGTGCATCTCTTCAAAACCTTAAGGGCTCTTCTGTTACACACACCATTTCTAAGACCACTAAGAAA
ATCATGGGCCAACATAGTACCCATGGCCACATATCAGGACCTGTAAGATTGTCTCAAAGTGAAAGCAAGT
TCAACCTTACTGCTCAACCTCAAAATGAGGATACTCCTGATGTCAGTGATAGAAATATCAAAGCTGAGGC
TAATGTTGAAGATAAACTTCTTTACAAAGATGATACAGACCATGAAGATGAGACAAATACTGAAGATGAA
ACGGATGGTGAAGATGAAACAGACACTGAAGATGAAGATGAAGATGATACCAAAGATAAAAAAGATCCTA
AAGACAAATCTGACCCTGATGGCAGTGATCCCAAAGATGGCAACTCTGAAAATAATACTGATAGCAACAA
TGGGTCTCAACCTAGTGGTTCTTCTGGACCTACAGGTGGACCTGATTCCAGCAATGATGGTGACTCTAAA
AATGTAACTGATCACAAGAGTGAATCTGACCCTACCATTGATAACGCTACCAACAGTGATGTTAACTTGA
AATATAGCACTGATGAGACATGTACCAACAATTTAGACAATGCTTCAGATCTGGCAGAATATTTCAATCA
TCACAATAATGCTGACTTCAAGGGTCGCACAAACCCAGCCTCTGGAAACAAAACTAGAACCATACTGGAC
TATATTTCTGGTTCCAACAATGAGGACACTGGCCCTAGAAATACGATGATAAAAGAAAAAATTGCTTATT
CTGAGAATATTAGATTGCTTTCCAACAGTTATCAAAATAATGTCATTAAAAATGGGAGTGAACCAAGCAG
CAACCCAAGCCCCCAAAACAGCTATGGGCTCCCAAAAGACCTTGACTCTAACTCTAATATCAATCCCAGT
AATGCTACTAACAATACTGTTAACCCTAACTATGGTGCAAAATCCACGAGCACTGCTATTTACAAAAAGA
CAGCTGCCCTAAACTATTATTCAGATATTAATGATGTCACAGGGTTTACATATGAAGTAAGGTCAAGTTT
TGTAGTCAACTCAAACTATTTTGACAGAAAGAAATATGCTGGTAGACTCAGCTTTGCACTTCACACTATC
AATGCCATTGATACAAATAATGTTATCACCTGTACTAGTGCTGTTAGGTCTAAGTTTGCTTCTGAAAAAA
CCTCTGTCCTAGACACTAAACATTCCCCTAGATTTAGTCGTTTCAGGAGTTTCAATGTTATCATCAGCCC
AAATTATAATACTAAAAATAGTCAGAATGCTAATAAATCCAGTATCAGCAATATTTACAACCTACCTGCC
ACTGAATTAGAAATAAATATATTATCTGTTCTTAAAATCATTTATGGAAATACCCCAAATTTTATTGCTG
GAACAAACTATCCTGATTTTTTGATAACCTCGGAATTTTATGAACCACTTAAGCTTTGTAGAGCTTATAA
AATTTTTGATAACCAAAATATTGATGCTCCATTCCAAGACTCTGCTGGATACATGGACTCTCATAATTCT
ACATATGCCACTGGGTCCATGGTTGCCCTTGATGCCAAAGAATCTGGCTTTTTAAAATATTTTCCTAGGA
TCCAGAATACAATTGGCATCAAGGATCCTTCTTGCCCTTTCAAGGTGTTTTCAAATCAAAATATTCTAGT
CCCTAGTTTCGATGTTATAGTGGAAGCTGAACTGCCAGATATTATGAAGTTTACTATATCATCAGGTGCT
GTGAATCAATTATTTCAGCTCAGACTCCAAACAGGTAGCAGACAAAATGTTGACCTTTGA

Translation (1139 aa):
MESEKTKMESESLWMISDSESYSVDSHTEKGRASVSKINLIQIDETEKPRTKRYLMESDSEPSNTDSDSE
GCELASAAVKYFIATKTFQQSSASSQFPKDSWSASRTINSDSESPVMSSDSMKYMKKAETCKSTCNLERL
KAAHKSESLQDWLDAKRKQLDSDNAGYWDSSGKYQFSSIVPQESVGKRQGDLQTFQHSTEKKEVGSSSDK
HQAQFGNERDQSDPKSKRYLIKTETGLDNEGFQMDEEREGCLVESDFRDSEREAHLLEAHRLGARKKENR
PPGFWRPIILPPKLAQDKKTEEQKSVQQKDNRVSRIQLTRYKSEDKNVRFEEASSSLSDKPLSQEKLKKK
HSYSFSPDSPTFTDEKHHRKASLKISGYKRQCKEYRYPHSCESLKYQISPIPLSSETCTSNVSSFVDSPT
SKSPKSVTRKKSRRSITYSPEQGSQKCTRCFMEISNSSYHKCLINSDDSDSDSPLHGQISSHSKYSLRSK
TIRHFKTSRNRPLSQSLDPQHSVVSRCSLHREDSKHSIDSTSYLHCESCASLQNLKGSSVTHTISKTTKK
IMGQHSTHGHISGPVRLSQSESKFNLTAQPQNEDTPDVSDRNIKAEANVEDKLLYKDDTDHEDETNTEDE
TDGEDETDTEDEDEDDTKDKKDPKDKSDPDGSDPKDGNSENNTDSNNGSQPSGSSGPTGGPDSSNDGDSK
NVTDHKSESDPTIDNATNSDVNLKYSTDETCTNNLDNASDLAEYFNHHNNADFKGRTNPASGNKTRTILD
YISGSNNEDTGPRNTMIKEKIAYSENIRLLSNSYQNNVIKNGSEPSSNPSPQNSYGLPKDLDSNSNINPS
NATNNTVNPNYGAKSTSTAIYKKTAALNYYSDINDVTGFTYEVRSSFVVNSNYFDRKKYAGRLSFALHTI
NAIDTNNVITCTSAVRSKFASEKTSVLDTKHSPRFSRFRSFNVIISPNYNTKNSQNANKSSISNIYNLPA
TELEINILSVLKIIYGNTPNFIAGTNYPDFLITSEFYEPLKLCRAYKIFDNQNIDAPFQDSAGYMDSHNS
TYATGSMVALDAKESGFLKYFPRIQNTIGIKDPSCPFKVFSNQNILVPSFDVIVEAELPDIMKFTISSGA
VNQLFQLRLQTGSRQNVDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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