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Report for CCDS30343.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30343.1 Public Mus musculus X Gm5127 23 108 98 CCDS HistoryNCBI Gene:331493Re-query CCDS DB by CCDS ID:30343.1Re-query CCDS DB by GeneID:331493See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 30343.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101296.8 ENSMUSP00000098854.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101296.8Link to Ensembl Protein Viewer:ENSMUSP00000098854.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101296Re-query CCDS DB by Protein ID:ENSMUSP00000098854
Original member Current member EBI ENSMUST00000101297.3 ENSMUSP00000098855.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101297.3Link to Ensembl Protein Viewer:ENSMUSP00000098855.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000101297Re-query CCDS DB by Protein ID:ENSMUSP00000098855
Original member Current member NCBI NM_001033541.2 NP_001028713.1 Accepted alive Link to Nucleotide Sequence:NM_001033541.2Link to Protein Sequence:NP_001028713.1Re-query CCDS DB by Nucleotide ID:NM_001033541Re-query CCDS DB by Protein ID:NP_001028713Link to BLAST:NP_001028713.1

Chromosomal Locations for CCDS 30343.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 106709116 106709754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGAAAGACCTCCGCAGGTACCTGATGTTCAAATACATCCAGTATCTAGTCCTGCCTTCTCCGAATGTCA
TCATCATTCTGCTGGGATCTCTTGCCAGTCTCTATGTCATGCTGCTATTGACATTTCCTTCCGTTTCCAG
AAAATCCACTGCGGTGTTTATTGGTAGCATAGCTCAGGCAGACATCTTAGTTGTCTGCAGCTTGTTTTCT
GCTATCTCAGCATGCGTGATAAGGAGCGAGCCATCGTCAACTTCTTTTCAACTAGCCTTGAGGCAAAACT
TCCAAATTGCAAATATCCATGCCAGTTCCCTTTTACTCAGCTGTGTTACCCTTGAGGCTTTTCTGATTAC
TTTTCTTCCAGTAGAGACACGCCACATAAGGAATGTTAGATGTGCCAGAGTGGCTTCTAAAATCATCTGG
GCTGTTGTAATTACCGAGTGTTTCCTTTATCAGCTTGAATATGTCAAAGGCCTTAACATCTCCTATCTTG
GCATTCATAGGCAAATTCAGCTATTGATGAATTTCTTTTATGAGGCCACAGTGCTGCTGAAATTACTTAT
TTATCCCATTGGAGTTCTTCTAAGAATCTTCAACGTATATCTTTTTTATAAAATGTATTTCCGAGACCAT
TATAGTTAG

Translation (212 aa):
MKDLRRYLMFKYIQYLVLPSPNVIIILLGSLASLYVMLLLTFPSVSRKSTAVFIGSIAQADILVVCSLFS
AISACVIRSEPSSTSFQLALRQNFQIANIHASSLLLSCVTLEAFLITFLPVETRHIRNVRCARVASKIIW
AVVITECFLYQLEYVKGLNISYLGIHRQIQLLMNFFYEATVLLKLLIYPIGVLLRIFNVYLFYKMYFRDH
YS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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