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Report for CCDS30254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30254.1 Public Mus musculus X Tmem47 23 108 98 CCDS HistoryNCBI Gene:192216Re-query CCDS DB by CCDS ID:30254.1Re-query CCDS DB by GeneID:192216See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30254.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026760.2 ENSMUSP00000026760.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026760.2Link to Ensembl Protein Viewer:ENSMUSP00000026760.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000026760Re-query CCDS DB by Protein ID:ENSMUSP00000026760
Original member Current member EBI ENSMUST00000171953.7 ENSMUSP00000129793.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171953.7Link to Ensembl Protein Viewer:ENSMUSP00000129793.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171953Re-query CCDS DB by Protein ID:ENSMUSP00000129793
Original member Current member NCBI NM_138751.2 NP_620090.1 Accepted alive Link to Nucleotide Sequence:NM_138751.2Link to Protein Sequence:NP_620090.1Re-query CCDS DB by Nucleotide ID:NM_138751Re-query CCDS DB by Protein ID:NP_620090Link to BLAST:NP_620090.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620090.1 181 Q9JJG6-1 181 100% 0 0

Chromosomal Locations for CCDS 30254.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 81070935 81071160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 81084291 81084431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 81094452 81094630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGGCTTCGGCTGGCAGCGGCATGGAAGAGGTGCGAGTGTCGGTGCTGACCCCGCTCAAGCTGGTCGGGC
TGGTGTGCATCTTCTTGGCGCTGTGTCTGGATCTGGGAGCTGTTCTGAGCCCGGCCTGGGTCACCGCGGA
CCACCAGTACTACCTGTCCCTGTGGGAGTCCTGCCGGAAACCCGCCAACCTGGATATCTGGCATTGCGAA
TCCACTCTCGGCAGCGATTGGCAGATTGCTACTCTGGCTTTACTCCTGGGCGGTGCTGCCATCATTCTCA
TTGCATTCCTGGTGGGTTTGATTTCAATCTGTGTGGGATCACGAAGGCGCTTCTACAGACCTGTTGCTGT
CATGCTTTTTGCAGCAGTTGTTTTGCAGGTCTGCAGCCTGGTTCTTTATCCAATCAAGTTCATTGAAACT
GTGAGCTTGAAAATTTACCACGAGTTCAATTGGGGTTATGGCCTGGCCTGGGGTGCAACTATATTTTCAT
TTGGGGGTGCCATTCTTTATTGCCTGAACCCTAAGAACTATGAAGACTACTACTAA

Translation (181 aa):
MASAGSGMEEVRVSVLTPLKLVGLVCIFLALCLDLGAVLSPAWVTADHQYYLSLWESCRKPANLDIWHCE
STLGSDWQIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYPIKFIET
VSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYEDYY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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