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Report for CCDS30207.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30207.1 Public Mus musculus X Pnck 23 108 98 CCDS HistoryNCBI Gene:93843Re-query CCDS DB by CCDS ID:30207.1Re-query CCDS DB by GeneID:93843See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30207.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002087.13 ENSMUSP00000002087.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002087.13Link to Ensembl Protein Viewer:ENSMUSP00000002087.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000002087Re-query CCDS DB by Protein ID:ENSMUSP00000002087
Original member Current member EBI ENSMUST00000114472.7 ENSMUSP00000110116.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114472.7Link to Ensembl Protein Viewer:ENSMUSP00000110116.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114472Re-query CCDS DB by Protein ID:ENSMUSP00000110116
Original member Current member EBI ENSMUST00000114473.7 ENSMUSP00000110117.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114473.7Link to Ensembl Protein Viewer:ENSMUSP00000110117.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114473Re-query CCDS DB by Protein ID:ENSMUSP00000110117
Original member Current member NCBI NM_001199351.1 NP_001186280.1 Accepted alive Link to Nucleotide Sequence:NM_001199351.1Link to Protein Sequence:NP_001186280.1Re-query CCDS DB by Nucleotide ID:NM_001199351Re-query CCDS DB by Protein ID:NP_001186280Link to BLAST:NP_001186280.1
Original member Current member NCBI NM_001199352.1 NP_001186281.1 Accepted alive Link to Nucleotide Sequence:NM_001199352.1Link to Protein Sequence:NP_001186281.1Re-query CCDS DB by Nucleotide ID:NM_001199352Re-query CCDS DB by Protein ID:NP_001186281Link to BLAST:NP_001186281.1
Original member Current member NCBI NM_012040.3 NP_036170.1 Accepted alive Link to Nucleotide Sequence:NM_012040.3Link to Protein Sequence:NP_036170.1Re-query CCDS DB by Nucleotide ID:NM_012040Re-query CCDS DB by Protein ID:NP_036170Link to BLAST:NP_036170.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186280.1 343 Q9QYK9 343 100% 0 0
NP_001186281.1 343 Q9QYK9 343 100% 0 0
NP_036170.1 343 Q9QYK9 343 100% 0 0

Chromosomal Locations for CCDS 30207.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 73656677 73656814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73656912 73656999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73657071 73657149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73657231 73657343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73657438 73657513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73657720 73657843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73658019 73658157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73658254 73658328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73658688 73658819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73659180 73659247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGCTGCTGCTCAAGAAACAGACGGAGGACATCAGCAGTGTCTATGAGATCCGGGAGAAGCTGGGCTCGG
GTGCCTTCTCTGAGGTGATGCTGGCCCAGGAAAGGGGCTCTGCTCATCTTGTGGCCCTCAAGTGCATTCC
CAAGAAAGCACTTCGGGGCAAGGAGGCCCTGGTGGAGAATGAGATCGCGGTACTTCGCAGAATCAGCCAT
CCCAACATTGTGGCTCTGGAGGACGTCCATGAGAGTCCTTCTCATCTCTACTTGGCCATGGAGCTGGTAA
CAGGTGGTGAACTGTTTGACCGCATCATGGAGCGGGGCTCCTACACAGAGAAGGACGCCAGCCACCTTGT
AGGGCAGGTCCTTGGCGCTGTCTCCTACCTTCATAGCCTGGGCATCGTGCACCGGGACCTCAAGCCTGAA
AACCTCCTCTATGCCACACCTTTTGAGGACTCCAAGATCATGGTCTCTGACTTTGGCCTGTCCAAAATAC
AAGCTGGCAACATGCTAGGCACAGCCTGTGGGACCCCAGGATATGTGGCCCCAGAGCTCCTGGAGCAGAA
ACCCTACGGGAAGGCCGTAGATGTGTGGGCCCTGGGTGTCATCTCCTACATCCTGCTGTGTGGGTACCCC
CCCTTCTATGATGAGAGCGATCCTGAACTCTTCAGCCAGATTCTGAGGGCCAGCTATGAGTTTGACTCCC
CCTTTTGGGATGACATCTCAGAATCAGCCAAAGACTTCATTCGCCACCTTCTGGAACGTGATCCCCAGAA
GAGGTTCACCTGCCAGCAGGCCCTACAGCATCTTTGGATCTCTGGGGATGCAGCCTTCGATAGGGACATC
CTGGGTTCTGTCAGTGAGCAGATCCAGAAGAATTTTGCCAGGACCCACTGGAAGCGTGCATTCAATGCCA
CATCATTCCTACGTCACATCCGTAAGCTGGGACAAAGCCCAGAGGGTGAGGAGGCCTCCAGGCAGTGTAT
GACCCGTCATAGCCACCCAGGCCTTGGGACTAGCCAGTCCCCCAAGTGGTGA

Translation (343 aa):
MLLLKKQTEDISSVYEIREKLGSGAFSEVMLAQERGSAHLVALKCIPKKALRGKEALVENEIAVLRRISH
PNIVALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHLVGQVLGAVSYLHSLGIVHRDLKPE
NLLYATPFEDSKIMVSDFGLSKIQAGNMLGTACGTPGYVAPELLEQKPYGKAVDVWALGVISYILLCGYP
PFYDESDPELFSQILRASYEFDSPFWDDISESAKDFIRHLLERDPQKRFTCQQALQHLWISGDAAFDRDI
LGSVSEQIQKNFARTHWKRAFNATSFLRHIRKLGQSPEGEEASRQCMTRHSHPGLGTSQSPKW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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