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Report for CCDS30201.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30201.1 Public Mus musculus X Trex2 23 108 98 CCDS HistoryNCBI Gene:24102Re-query CCDS DB by CCDS ID:30201.1Re-query CCDS DB by GeneID:24102See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30201.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033738.7 ENSMUSP00000033738.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033738.7Link to Ensembl Protein Viewer:ENSMUSP00000033738.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033738Re-query CCDS DB by Protein ID:ENSMUSP00000033738
Original member Current member NCBI NM_011907.4 NP_036037.1 Accepted alive Link to Nucleotide Sequence:NM_011907.4Link to Protein Sequence:NP_036037.1Re-query CCDS DB by Nucleotide ID:NM_011907Re-query CCDS DB by Protein ID:NP_036037Link to BLAST:NP_036037.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036037.1 236 Q9R1A9 236 100% 0 0

Chromosomal Locations for CCDS 30201.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 73433929 73434639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGTCTGAGCCACCCCGGGCTGAGACCTTTGTATTCCTGGACCTAGAAGCCACTGGGCTCCCAAACATGG
ATCCTGAGATTGCAGAGATATCCCTTTTTGCTGTTCACCGCTCTTCCCTGGAGAACCCAGAACGGGATGA
TTCTGGTTCCTTGGTGCTGCCCCGTGTTCTGGACAAGCTCACACTGTGCATGTGCCCGGAGCGCCCCTTT
ACTGCCAAGGCCAGTGAGATTACTGGTTTGAGCAGCGAAAGCCTGATGCACTGCGGGAAGGCTGGTTTCA
ATGGCGCTGTGGTAAGGACACTGCAGGGCTTCCTAAGCCGCCAGGAGGGCCCCATCTGCCTTGTGGCCCA
CAATGGCTTCGATTATGACTTCCCACTGCTGTGCACGGAGCTACAACGTCTGGGTGCCCATCTGCCCCAA
GACACTGTCTGCCTGGACACACTGCCTGCATTGCGGGGCCTGGACCGTGCTCACAGCCACGGCACCAGGG
CTCAAGGCCGCAAAAGCTACAGCCTGGCCAGTCTCTTCCACCGCTACTTCCAGGCTGAACCCAGTGCTGC
CCATTCAGCAGAAGGTGATGTGCACACCCTGCTTCTGATCTTCCTGCATCGTGCTCCTGAGCTGCTCGCC
TGGGCAGATGAGCAGGCCCGCAGCTGGGCTCATATTGAGCCCATGTACGTGCCACCTGATGGTCCAAGCC
TCGAAGCCTGA

Translation (236 aa):
MSEPPRAETFVFLDLEATGLPNMDPEIAEISLFAVHRSSLENPERDDSGSLVLPRVLDKLTLCMCPERPF
TAKASEITGLSSESLMHCGKAGFNGAVVRTLQGFLSRQEGPICLVAHNGFDYDFPLLCTELQRLGAHLPQ
DTVCLDTLPALRGLDRAHSHGTRAQGRKSYSLASLFHRYFQAEPSAAHSAEGDVHTLLLIFLHRAPELLA
WADEQARSWAHIEPMYVPPDGPSLEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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