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Report for CCDS30126.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30126.1 Public Mus musculus X Ccdc160 23 108 98 CCDS HistoryNCBI Gene:434778Re-query CCDS DB by CCDS ID:30126.1Re-query CCDS DB by GeneID:434778See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30126.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101588.1 ENSMUSP00000099121.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101588.1Link to Ensembl Protein Viewer:ENSMUSP00000099121.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000101588Re-query CCDS DB by Protein ID:ENSMUSP00000099121
Original member NCBI NM_001034059.1 NP_001029231.1 Updated not alive Link to Nucleotide Sequence:NM_001034059.1Link to Protein Sequence:NP_001029231.1Re-query CCDS DB by Nucleotide ID:NM_001034059Re-query CCDS DB by Protein ID:NP_001029231
Current member NCBI NM_001034059.2 NP_001029231.1 Accepted alive Link to Nucleotide Sequence:NM_001034059.2Link to Protein Sequence:NP_001029231.1Re-query CCDS DB by Nucleotide ID:NM_001034059Re-query CCDS DB by Protein ID:NP_001029231Link to BLAST:NP_001029231.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001029231.1 323 Q3UYG1 323 100% 0 0

Chromosomal Locations for CCDS 30126.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 52798083 52799054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGATGCTCGAAGAAAGCACTGGAAAGACAATACGTTCACTCCTTTTTTAAACGAGCACGATTTTCAGG
AAGCTGCTGCTCCACCCCAGCCTCTCTCTGAACAGTCATCAGCAGACAACCACAAGAGGATGGGGAGAGT
GTCTAACTTCTCCGTTAGGAACACTCAAGAAGGAAATAAATTCAAGAGGAAAGACTATTCTTCCCAGATA
GCAGAAGGAGAACAAGATTCAAATTTAAGAGAGAGAAGAATGAACGTGTCAAAGAATGATGCAAATACCA
ATTCTGCCTTCTGGGACTCTCTTCATTTGGATGATGCAACGAAGGAAAGTTCACACAGAAGGGAGAGCGC
CTCCGCGTGGAATAAGAAGAAATTGCCGGCCGCCACACAAGTCACCAGGAAGAAATGGACAGAAGCAATG
CCTCCAAAACTCCGCCTACACCTTCTGAACGAAGAGCTGGGAGAACTCAGCCTGAAATGCCGGGAGATTG
AACGGGACTTTGAAAACGCCGAAAAAGAACTTTTGAACTTTAGAAAGGAAGCCTCCGTGAAAGCTGTCAA
TTTTCAAGAACCAGGGACAGGTGCTTCCAAGAAAGACCGGGAACTGCAAGCTTTAAAAAACGACCTGTCT
GAAAAAGCGACAAACGTAAAAAACTTAACTGAAGAGCTCCAGCAAGCCAAAGAAGTCATGTACAGGTTGA
GCCTAGAGAACAGGAACTTGAAAGACGCTGTCAGGAAACTGAAGCATCAAACTGAACTAAATACTGCGCT
CCTCAGAGAAGAAATGAAGTTGTTTTACGAGCTGGAGATGGAAAAGATCCGCTTGGAGCTGGGTGCCATC
AAGAATGAGCTGAGAGTCGAGAAGACCCTAAGGGTGAAGAACAGCAGGGCTCTGGAGGTGCTTGGAAGAC
ACGTTGCTTCAGTGGTAAGGTCGTCAAATCCTGCTGACCACTTTACTGGGAATATTTTTTAA

Translation (323 aa):
MDARRKHWKDNTFTPFLNEHDFQEAAAPPQPLSEQSSADNHKRMGRVSNFSVRNTQEGNKFKRKDYSSQI
AEGEQDSNLRERRMNVSKNDANTNSAFWDSLHLDDATKESSHRRESASAWNKKKLPAATQVTRKKWTEAM
PPKLRLHLLNEELGELSLKCREIERDFENAEKELLNFRKEASVKAVNFQEPGTGASKKDRELQALKNDLS
EKATNVKNLTEELQQAKEVMYRLSLENRNLKDAVRKLKHQTELNTALLREEMKLFYELEMEKIRLELGAI
KNELRVEKTLRVKNSRALEVLGRHVASVVRSSNPADHFTGNIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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