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Report for CCDS30078.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30078.1 Public Mus musculus X Rhox4e 23 108 98 CCDS HistoryNCBI Gene:194856Re-query CCDS DB by CCDS ID:30078.1Re-query CCDS DB by GeneID:194856See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30078.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089075.5 ENSMUSP00000086475.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089075.5Link to Ensembl Protein Viewer:ENSMUSP00000086475.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000089075Re-query CCDS DB by Protein ID:ENSMUSP00000086475
Original member Current member NCBI NM_201236.3 NP_957688.2 Accepted alive Link to Nucleotide Sequence:NM_201236.3Link to Protein Sequence:NP_957688.2Re-query CCDS DB by Nucleotide ID:NM_201236Re-query CCDS DB by Protein ID:NP_957688Link to BLAST:NP_957688.2

Chromosomal Locations for CCDS 30078.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 37557634 37557700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37557891 37558296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37560690 37560735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37562047 37562145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGGAGCATCAAAACACCAACTACCTACTTCATGAGGGACTTGGCAAGGACAAGGAAAATTTGAATGGTG
GG
AAGACACAGGCAGTCTTACCACTGGATGGAGAGGGAAGAAATGAGGGAGAGAGTGTACTGGGCCAGTC
C
GGAGCCGCAGCAGTGGAATGGGACAAAGCAGAAGAATTAAGTGGAGAAGGTGGGCCTGCTGCTGGTGAT
GCA
GACCTCATGGATAACAGCAACCAAGAGGACCAGGACACCAGTGGCAGTGCCCAGGAGGAGGAGAAGC
TG
CCAGAGGAGCCAGTTCTCAGGGATGCTGTGGTCATAGACAAAGTGCAGCCTATTCCAGTGCTGGTATC
T
GGTGTGCGGCCTAAGTCAGTGTGGGTACAGCAGCGTAGCTTACACTACAATTTCCAATGGTGGCAGCTG
CAG
GAGCTGGAGCGCATTTTCCAGCAGAATCACTTCATCCGTGCAGAGGAAAGAAGACATCTGGCAAGAT
GG
ATAGGTGTGAGTGAAACCAGAGTTAAGAGATGGTTTAAGAAGAGGAGAGAGCACTTCAGAAGAGGACA
A
AGTCAGTTAGGAATGAATGATGATGCCCCTGTGGGGTCCCACTCTACCTTTCTCTGA


Translation (205 aa):
MEHQNTNYLLHEGLGKDKENLNGGKTQAVLPLDGEGRNEGESVLGQSGAAAVEWDKAEELSGEGGPAAGD
A
DLMDNSNQEDQDTSGSAQEEEKLPEEPVLRDAVVIDKVQPIPVLVSGVRPKSVWVQQRSLHYNFQWWQL
Q
ELERIFQQNHFIRAEE
RRHLARWIGVSETRVKRWFKKRREHFRRGQSQLGMNDDAPVGSHSTFL



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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