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Report for CCDS30069.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30069.1 Public Mus musculus X Nkap 23 108 98 CCDS HistoryNCBI Gene:67050Re-query CCDS DB by CCDS ID:30069.1Re-query CCDS DB by GeneID:67050See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30069.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016553.4 ENSMUSP00000016553.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016553.4Link to Ensembl Protein Viewer:ENSMUSP00000016553.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000016553Re-query CCDS DB by Protein ID:ENSMUSP00000016553
Original member Current member NCBI NM_025937.4 NP_080213.3 Accepted alive Link to Nucleotide Sequence:NM_025937.4Link to Protein Sequence:NP_080213.3Re-query CCDS DB by Nucleotide ID:NM_025937Re-query CCDS DB by Protein ID:NP_080213Link to BLAST:NP_080213.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080213.3 415 Q9D0F4 415 100% 0 0

Chromosomal Locations for CCDS 30069.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 37126996 37127375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37130978 37131058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37136512 37136582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37136752 37136892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37139677 37139740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37141638 37141747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37141837 37141912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37142905 37143054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37147791 37147965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGCTCCTGTATCGGGCTCGCGTAGCCCTGAACGGGAGGCCTCCGGGGCGAAGCGTCGCAGTCCATCGC
GGAGCCCCAAATCCATCAAATCTTCCCGCTCCCCGCGGTGTCGCCGGTCTCGCTCGCGCTCTTGTTCTCG
GTTCGGCGACCGGAATGGCCTCAGTCATTCGCTGAGTGGCTTCAGCCAAAGCTCCCGAAACCAATCTTAC
CGCTCCCGCTCTCGATCGCGCTCTCGCGAACGGCCCTCGGCACAGCGGAGCGCCCCGTTTGCTTCTGCAT
CCTCGTCCGCCTATTACGGCGGCTACTCGCGTCCCTACGGGGGCGACAAGCCATGGCCTAGCCTGCTGGA
CAAGGAAAGGGAGGAGAGTCTCCGGCAGAAGAGATTAAGTGAAAGAGAGAGGATTGGAGAATTGGGAGCT
CCTGAAGTTTGGGGACTTTCCCCAAAGAATCCTGAACCAGACTCTGATGAACATACACCAGTAGAGGATG
AAGAACCAAAGAAAAGCACTACTTCAGCATCTAGTTCAGAAGATGATAAGAAGAAGAAAAGGAAATCTAG
TCATTCAAAAGACAGAGCCAAGAAAAAGAGAAAGAAAAAGTCATCTAAAAGAAAACATAAAAAGTATTCT
GAAGATAGCGACAGTGACTCTGAATCTGACACAGACTCCAGCGATGAAGATTCAAAAAGAAGAGCAAAGA
AAGCTAAGAAAAAGGACAAGAAAAAGAAACGAAGAGGGAAGAAATACAAGAAAAAGAAGTCTAAGAAAAA
CAGAAAAGAGTCCAGTGATTCGAGCTCTAAAGAGTCCCAAGAAGAATTTCTAGAGAATCCTTGGAAGGAT
CGATCAAAGGCAGAAGAACCATCAGATTTGATTGGCCCAGAGGCTCCCAAAACTCTTGCCTCCCAAGATG
ATAAGCCTTTGAACTATGGCCACGCTCTGTTACCTGGTGAAGGCGCAGCTATGGCTGAATATGTAAAAGC
TGGCAAGCGTATCCCAAGAAGAGGTGAAATTGGCTTGACAAGTGAAGAGATCGCATCATTTGAATGTTCC
GGTTACGTAATGAGTGGTAGCAGGCATCGCCGAATGGAGGCTGTTCGACTTCGGAAAGAGAACCAGATCT
ACAGTGCTGATGAGAAGAGAGCCCTTGCATCCTTTAACCAAGAAGAAAGACGAAAGAGGGAGAACAAGAT
TCTGGCCAGCTTTCGTGAGATGGTATACAGAAAGACCAAAGGGAAGGATGACAAGTGA

Translation (415 aa):
MAPVSGSRSPEREASGAKRRSPSRSPKSIKSSRSPRCRRSRSRSCSRFGDRNGLSHSLSGFSQSSRNQSY
RSRSRSRSRERPSAQRSAPFASASSSAYYGGYSRPYGGDKPWPSLLDKEREESLRQKRLSERERIGELGA
PEVWGLSPKNPEPDSDEHTPVEDEEPKKSTTSASSSEDDKKKKRKSSHSKDRAKKKRKKKSSKRKHKKYS
EDSDSDSESDTDSSDEDSKRRAKKAKKKDKKKKRRGKKYKKKKSKKNRKESSDSSSKESQEEFLENPWKD
RSKAEEPSDLIGPEAPKTLASQDDKPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIASFECS
GYVMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRENKILASFREMVYRKTKGKDDK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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