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Report for CCDS30018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30018.1 Public Mus musculus X Mid1ip1 23 108 98 CCDS HistoryNCBI Gene:68041Re-query CCDS DB by CCDS ID:30018.1Re-query CCDS DB by GeneID:68041See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30018.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008179.6 ENSMUSP00000008179.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008179.6Link to Ensembl Protein Viewer:ENSMUSP00000008179.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000008179Re-query CCDS DB by Protein ID:ENSMUSP00000008179
Original member Current member EBI ENSMUST00000115524.7 ENSMUSP00000111186.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115524.7Link to Ensembl Protein Viewer:ENSMUSP00000111186.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115524Re-query CCDS DB by Protein ID:ENSMUSP00000111186
Original member Current member NCBI NM_001166635.1 NP_001160107.1 Accepted alive Link to Nucleotide Sequence:NM_001166635.1Link to Protein Sequence:NP_001160107.1Re-query CCDS DB by Nucleotide ID:NM_001166635Re-query CCDS DB by Protein ID:NP_001160107Link to BLAST:NP_001160107.1
Original member Current member NCBI NM_026524.4 NP_080800.1 Accepted alive Link to Nucleotide Sequence:NM_026524.4Link to Protein Sequence:NP_080800.1Re-query CCDS DB by Nucleotide ID:NM_026524Re-query CCDS DB by Protein ID:NP_080800Link to BLAST:NP_080800.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001160107.1 182 Q9CQ20 182 100% 0 0
NP_080800.1 182 Q9CQ20 182 100% 0 0

Chromosomal Locations for CCDS 30018.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 10718230 10718778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (549 nt):
ATGATGCAAATCTGCGACACATATAACCAGAAGCACTCGCTCTTTAACGCCATGAATCGCTTCATTGGCG
CGGTGAACAACATGGACCAGACGGTGATGGTGCCCAGTCTGCTGCGCGACGTACCCCTGTCCGAGCCGGA
GATAGACGAGGTCAGCGTGGAGGTAGGCGGCAGTGGCGGCTGCCTGGAGGAGCGCACGACCCCGGCCCCA
AGCCCGGGCAGCGCCAATGAAAGCTTTTTCGCGCCCTCCCGGGACATGTACAGCCACTACGTGCTGCTCA
AGTCCATCCGCAATGATATCGAGTGGGGAGTCCTGCACCAGCCTTCGTCTCCGCCGGCCGGGAGCGAGGA
GAGCACCTGGAAGCCCAAGGACATCCTGGTGGGCCTGAGTCACTTGGAGAGCGCGGATGCGGGCGAGGAA
GATCTGGAGCAGCAGTTCCACTACCACCTGCGCGGGCTGCACACCGTGCTCTCCAAACTCACCCGAAAAG
CCAACATCCTCACCAATAGATACAAGCAGGAGATCGGCTTCAGTAATTGGGGCCACTGA

Translation (182 aa):
MMQICDTYNQKHSLFNAMNRFIGAVNNMDQTVMVPSLLRDVPLSEPEIDEVSVEVGGSGGCLEERTTPAP
SPGSANESFFAPSRDMYSHYVLLKSIRNDIEWGVLHQPSSPPAGSEESTWKPKDILVGLSHLESADAGEE
DLEQQFHYHLRGLHTVLSKLTRKANILTNRYKQEIGFSNWGH


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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