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Report for CCDS30007.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30007.1 Public Mus musculus X Lancl3 23 108 98 CCDS HistoryNCBI Gene:236285Re-query CCDS DB by CCDS ID:30007.1Re-query CCDS DB by GeneID:236285See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30007.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069763.2 ENSMUSP00000064516.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069763.2Link to Ensembl Protein Viewer:ENSMUSP00000064516.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000069763Re-query CCDS DB by Protein ID:ENSMUSP00000064516
Original member Current member NCBI NM_173414.3 NP_775590.2 Accepted alive Link to Nucleotide Sequence:NM_173414.3Link to Protein Sequence:NP_775590.2Re-query CCDS DB by Nucleotide ID:NM_173414Re-query CCDS DB by Protein ID:NP_775590Link to BLAST:NP_775590.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775590.2 420 Q8CD19-1 420 100% 0 0

Chromosomal Locations for CCDS 30007.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 9200230 9200802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9248039 9248162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9251222 9251419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9257946 9258153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 9265526 9265685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGGACACCAAGCGCTGCTTCGCCAACCGCTTCGATGACTACCAGGGCAGCCTGCTGGCGGGCCAGTGCG
AGGAGGCAGTGGCGCCCTTGGTCACCTCCACCATCGAACGCATTCTTCAGGAGCTGCCCCCGCTGGGGGG
CGGCGCTGAGGCTCGGGGGGCGACAGGCGCGGGCAGCAGCTGCCAGGGGGGTCTGTACAGCGGCGTGGCC
GGGGTGGCCTACATGCTCTACCACGTCTCCCAGAGCCCGCTCTTCGCCGCCGCCCGGGAGCGCTACCTGC
GCTTCGCCAAGCGCCTCATCGACGCGTGCCTCCGCGCCGAGGAGTGGGGCGAGACGGACGCGGACACCCG
TGCTGCCTTTCTGCTCGGGGGCGCGGGCGTGTATGCGGTGGCCACGCTGGTCTACCACGCCCTGGGCCGC
CCCGACTACGTGCAGCCCCTCGGCAAGTTCCGGGCTCTGTGCGCCGTCTGCGCGCCGGTCTCCTTCCTGG
ACTGTGGCTCCGACGAGCTGTTCGTGGGTCGCGCCGGCTACCTGTGCGCCGCGCTCGTGCTCAAGCAGAA
GCTCGCCCAGGAGGTATTGACCCCAACACAAATTAAAGCAATATGCCAGGCGATTCTGGACTCTGGGAAG
CAGTATGCTCTGAAGAAGAGAAAACCATTCCCCCTGATGTATTCTTACTACGGAACAGAATACCTGGGGG
CAGCTCACGGCCTGTCGTCCATTCTCCAGATGCTCCTTTCCTACCAGGAGCATCTCAAACCTTCAGATCG
GGAGCTGGTGTGGCAGAGCGTGGATTTCCTCATGGAACAGGAGCAGAATTGCAACTGGCCACCAGAGCTT
GGCGAGACCATCGAGAGAGAGAATGAACTTGTCCACTGGTGCCACGGCGCTCCAGGAATTGCTTATCTGT
TTGCCAAAGCTTATCTCATTTCCAAGAAACCGCAGTACCTGGACACATGTATCCGGTGTGGGGAGCTGAC
ATGGCAGAAAGGCCTGTTGAAGAAGGGGCCAGGGATTTGCCATGGTGTAGCTGGCAGTGCCTATGTCTTC
CTTCTTCTGTACCGTCTTACAGGAAACTCGAAATATATCTACCGTGCCCAAAGGTTTGCTCAGTTCTTAT
TCACTGAAGAATTCAAATCCGGTTCCCGGGTCCTTGAAAGCATCTACAGCTTGTACGAAGGCTTCTCTGG
AACTGTTTGCTTTCTCATTGATCTACTGCAGCCCAATCAGGCAGAATTTCCTCTCTTCAGCGTCTTTGTT
TAA

Translation (420 aa):
MDTKRCFANRFDDYQGSLLAGQCEEAVAPLVTSTIERILQELPPLGGGAEARGATGAGSSCQGGLYSGVA
GVAYMLYHVSQSPLFAAARERYLRFAKRLIDACLRAEEWGETDADTRAAFLLGGAGVYAVATLVYHALGR
PDYVQPLGKFRALCAVCAPVSFLDCGSDELFVGRAGYLCAALVLKQKLAQEVLTPTQIKAICQAILDSGK
QYALKKRKPFPLMYSYYGTEYLGAAHGLSSILQMLLSYQEHLKPSDRELVWQSVDFLMEQEQNCNWPPEL
GETIERENELVHWCHGAPGIAYLFAKAYLISKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVF
LLLYRLTGNSKYIYRAQRFAQFLFTEEFKSGSRVLESIYSLYEGFSGTVCFLIDLLQPNQAEFPLFSVFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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