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Report for CCDS29968.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29968.1 Public Mus musculus X Magix 23 108 98 CCDS HistoryNCBI Gene:54634Re-query CCDS DB by CCDS ID:29968.1Re-query CCDS DB by GeneID:54634See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29968.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115695.3 ENSMUSP00000111359.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115695.3Link to Ensembl Protein Viewer:ENSMUSP00000111359.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115695Re-query CCDS DB by Protein ID:ENSMUSP00000111359
Original member Current member NCBI NM_018832.2 NP_061302.2 Accepted alive Link to Nucleotide Sequence:NM_018832.2Link to Protein Sequence:NP_061302.2Re-query CCDS DB by Nucleotide ID:NM_018832Re-query CCDS DB by Protein ID:NP_061302Link to BLAST:NP_061302.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061302.2 324 Q4KL35 324 100% 0 0

Chromosomal Locations for CCDS 29968.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7674902 7675191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7675841 7676009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7676100 7676336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7677120 7677202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7679900 7680046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7680950 7680998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGGACTCTCGCGCTGGGAACACGGCAGACCCTAGAGGGGGCAGAAGAGGAGGTGGCTTACAAGGGTCCA
GGAGTCCCCGAGCTCGGCAGCTCCTGGAGCGGCTGGATGCGCGCCCCCTGGCGGCACGAGCCGCCGCGGA
CTTGACAGCGCTAGTACGAAAAGCGGGCGCCACATTGCGCCTGCGCCACACGGAGGGTGTTAGTGGTCTG
GATTCTGCAGATATAGAAGTCACAGACAGTCGCTTGCCTCATGCTACTCTTGTGAAACATCGACCCCAGC
ATCAAAGGTCTGAGACTCTAGGTACATGGACGGAGCCACTTCCAGTAACCCAGAATAAGGCAAGCTATGC
TTTGAAAGTACCCCAAGCCACTGGCCGATTTTCTGTGGAGCTGACCCGAGGTCCGGCAGGTTTTGGTCTC
ACTTTAAGTGGAGGCCGAAATGTATCTGGGGATGCTCCATTGACCGTGCATGGACTGCTGAAGGATGGGC
CAGCACAGCGATGTGGTCGTTTGCAGGCTGGTGACCTCGTGCTCTATATCAATGGCCAGTCAACACAGGG
CCTTACTCATGCCCAGGTGGTGGAGAGGATTCGAACTGGAGGCCCCCACCTTTGCCTGGTACTTCAAAGG
CCTCAAGACATGGATGGCAGTAGGATCAAGGAGGTTGGAGGACATCGGAAGACAGATCGCAGCCTAGATC
CTAGGGGAAGCAGGGTGGAGTCTCGCAGCACCATTTCCCCAGTTCACCACCGGCCCAAGACCCGGACCAG
TCCCAGACCTAGTCCAGAGGCAGTGGCTATTGGCCACGTGGTTCGCGCAGTGGAGCACCCCACAGAAGAC
CTGGAAAACCGTATCCCTGGTACCCCTGGGCCCTGGCTGGTGCCCAGCGAGGACCGGCTCTCGCGGGCTC
TAGGGGTTCGGGGTGGGGGCGCGCAGCTTGCTCTGGAGATGGCAGCCGGAAGGCGGAGGCATTGA

Translation (324 aa):
MDSRAGNTADPRGGRRGGGLQGSRSPRARQLLERLDARPLAARAAADLTALVRKAGATLRLRHTEGVSGL
DSADIEVTDSRLPHATLVKHRPQHQRSETLGTWTEPLPVTQNKASYALKVPQATGRFSVELTRGPAGFGL
TLSGGRNVSGDAPLTVHGLLKDGPAQRCGRLQAGDLVLYINGQSTQGLTHAQVVERIRTGGPHLCLVLQR
PQDMDGSRIKEVGGHRKTDRSLDPRGSRVESRSTISPVHHRPKTRTSPRPSPEAVAIGHVVRAVEHPTED
LENRIPGTPGPWLVPSEDRLSRALGVRGGGAQLALEMAAGRRRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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