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Report for CCDS29964.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29964.2 Public Mus musculus X Ppp1r3f 23 108 98 CCDS HistoryNCBI Gene:54646Re-query CCDS DB by CCDS ID:29964.2Re-query CCDS DB by GeneID:54646See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 29964.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data and by conservation in some species.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 29964.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115742.8 ENSMUSP00000111407.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115742.8Link to Ensembl Protein Viewer:ENSMUSP00000111407.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115742Re-query CCDS DB by Protein ID:ENSMUSP00000111407
Original member NCBI NM_138605.3 NP_613071.3 Updated not alive Link to Nucleotide Sequence:NM_138605.3Link to Protein Sequence:NP_613071.3Re-query CCDS DB by Nucleotide ID:NM_138605Re-query CCDS DB by Protein ID:NP_613071
Current member NCBI NM_138605.4 NP_613071.3 Accepted alive Link to Nucleotide Sequence:NM_138605.4Link to Protein Sequence:NP_613071.3Re-query CCDS DB by Nucleotide ID:NM_138605Re-query CCDS DB by Protein ID:NP_613071Link to BLAST:NP_613071.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_613071.3 799 Q9JIG4-1 799 100% 0 0

Chromosomal Locations for CCDS 29964.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7559618 7560883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7563862 7563941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7564236 7564288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7573248 7574248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2400 nt):
ATGGCGCGCACGGCCCCTGTGGAGCCACCGCTGCGGCATCCCGCGCCCCCGTCGCCGGCTGCGGGAGAGC
CCCGCGCCTCGGCTGAGGCGGCGGTGGCCCCGCGGAGGGTGCTGTTCGCTGACGAGGCCCTGGGGCTGCC
TCTGGCGCAGCTACGCCGCTACCGGCCGTGGGGCGGGCCCGGGGCGGGCAAGATGGCGGCGGCGACCGGG
CAAGATGGCGGCGGTGGCGGGGCTGATGAGGAAGACGATGGCGAGGATGGGGATGAAGGGGAGGAGGAAG
AGGAGGCTTTTCCCGATCCCTCTCCGCCGTGCCCCGTTCCCGCTGGCGGGGGGTTTTACCTGGTGCCCAC
ATTTTCGTTGCCGCCCGCGCTGGGCCGTCTGGAGCGGTTGGGGCGCGTGATGGTGGAGTTGGAGGCGCTG
CTGCCGCCTCCTGGAGCGGTTCCCGGGGGTTCCGGGGTGTGGGTGCCTGGGGGACGCCCGCCAGTGGTGC
GCGGGTTGGTGCGCGTGCTGAACCGCTCCTTCGAGAAGGCGGTGCACGTGCGGGCCTCACACGACGGTTG
GGCTACCTTCTGCGACCACCCAGCCCGCTATGTCCCACGCAGCCCGCCTGGGGCAGGAGTGGGAGGAACA
GGAGCAGGAGATCCCCTCCTGGATCCCGGGCTAGGCCTGGGCCCTGGCCAGATGTCAGCCTCCTCACCCG
ACGACGGTGGCTGCACTGACCGCTTTGCCTTCCAGCTGCCCTTTGCTGAGGGCGCGAGCGATGGGGCGCG
CCTCGACTTCGTGGTGCGCTATGAGACCCCCGAGGGCACTTTCTGGGCCAACAACCATGGCCGCAACTAC
ACTGTCCTGCTCCGGATCGCACCCGCTCCCACACCCACTGATGCCGAAGGGCTGCCCCAGCAGCAGCAGC
TGCAGCAGCTGGAGCCACAGCCTGAGTGCCAGGGTCCTGTGGAGGCTGAGGCCAGGCAGCTGAAGAGCTG
CATGAAGCCGGTGAGGCGCAGGCCTTTTGAAGAAGAGCCAAGGATGAGGAGTGCGGACGATAATACCCTA
GCAGAACATCCTGATGTTCGAGAGTCACTAGGTCCCCTGTTGGCCCCTACCCCTCTCCGTCCATGGCCCC
AGATGACACTTCAGGTGCCCGAAGTTATGTTGACCAGCAACCCTCAAGAAGAAGGTGACATCCCCAGAAG
CAACCCACCTGTGGCTTTTACAGAGGTCCGCCAGGCACCTGCCATCAGGATTCTTCCAGCAACCTGTGGC
CTGGGTGGCCCCCCAAGGGACCAGGCCTCAGGGCCCGATGCAAGTGATAGAGCTGCTGGCTCCTTCCTGG
AACCCACCCAGCAGCAGGTGGAGGCTGCGTGGGAAAGTGGAGGGGGTCGAAAGGCCCCTATGGTAGGGGC
TCTGACAGATGAGCCCGCCAGGGGTCTGGAGATTGTGAGTGGCTTGGATGAGTTGCTTGGTGAAGACACC
ATTGACCAGGAGTTGGAGCAGCTCTACCTGTCTCACCTGAGCCGCTTGAGAGCTGTGGCAGCGGCGGGTG
GCGGGGAAGGCACTTCCCCCACTCATGCCCTGGGCATACTCACAGACCGTGACCTGATCTTGAAGTGGCC
TGGCCCCGAGAGGGCCCTGAACAGTGCTCTGGCCGAGGAGATCACGCTGCACTATGCGCGCCTGGGCTGT
GGCGTGGAGCTCATCAAGGACACTGAAGACCCAGATGACGAGGGGGAGGGTGAAGATGGGCTCTCCATCA
CTCCTTCTAGCCCTGAAGGGGGCAGCCCTAAGGAATCGCCTCCAGAAATCCTCTCTGGAGCCCGCTCTGT
GATAGCTACTATGGGAGATGTGTGGGTTCCATGGGCAGAGCGCTCTAGCTCTAGATGTGATAGCCCAGTG
GTTCTGGGAACACAGGGTCAGTTCACTGAGAATCCAGAGAAAGGGATGGGCAAGGACACCAAGTCTCTGC
ACCTGAATAGGGTAATAGTTGGGATGAGCAAGTCCCCTGGGGAGGCTGGGACGGAAAGCCAGATGGAGGA
GCTACCTACTGAGCGGGAAAGCAGCTGGGTACCTAGTTCTGAGAAAGAGCTGCCTCTACCAGTCCAGCAA
GAGCAGAGTCCTGCCCTCCTTGGTCCCACAGGGACTGAAGTCTGTCTGTCTAGTGTAGCCAAGCCTCATG
TGAACTCCCAGGAAGAAGAGGGTGGAAGCCTGAATCTTGAGTCCCCAAAGAGGTCTCCCATGCCAGCGGC
CCCTGCAGAATGTGCGTGTGGGTTGGCTCCTCAGCTCTGGGGGCCCTTGACCCAAACTTTGGGTGTACTG
GCTGGGCTCGTTATGGTCCCCGTGGCTTTGAACAGCGGTGTGTCCCTTCTGGTGCTGGTGCTGTGCCTCT
CTCTGGCCTGGTTCTCGTAG

Translation (799 aa):
MARTAPVEPPLRHPAPPSPAAGEPRASAEAAVAPRRVLFADEALGLPLAQLRRYRPWGGPGAGKMAAATG
QDGGGGGADEEDDGEDGDEGEEEEEAFPDPSPPCPVPAGGGFYLVPTFSLPPALGRLERLGRVMVELEAL
LPPPGAVPGGSGVWVPGGRPPVVRGLVRVLNRSFEKAVHVRASHDGWATFCDHPARYVPRSPPGAGVGGT
GAGDPLLDPGLGLGPGQMSASSPDDGGCTDRFAFQLPFAEGASDGARLDFVVRYETPEGTFWANNHGRNY
TVLLRIAPAPTPTDAEGLPQQQQLQQLEPQPECQGPVEAEARQLKSCMKPVRRRPFEEEPRMRSADDNTL
AEHPDVRESLGPLLAPTPLRPWPQMTLQVPEVMLTSNPQEEGDIPRSNPPVAFTEVRQAPAIRILPATCG
LGGPPRDQASGPDASDRAAGSFLEPTQQQVEAAWESGGGRKAPMVGALTDEPARGLEIVSGLDELLGEDT
IDQELEQLYLSHLSRLRAVAAAGGGEGTSPTHALGILTDRDLILKWPGPERALNSALAEEITLHYARLGC
GVELIKDTEDPDDEGEGEDGLSITPSSPEGGSPKESPPEILSGARSVIATMGDVWVPWAERSSSRCDSPV
VLGTQGQFTENPEKGMGKDTKSLHLNRVIVGMSKSPGEAGTESQMEELPTERESSWVPSSEKELPLPVQQ
EQSPALLGPTGTEVCLSSVAKPHVNSQEEEGGSLNLESPKRSPMPAAPAECACGLAPQLWGPLTQTLGVL
AGLVMVPVALNSGVSLLVLVLCLSLAWFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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