NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29930.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29930.1 Public Mus musculus 19 Pnlip 23 108 98 CCDS HistoryNCBI Gene:69060Re-query CCDS DB by CCDS ID:29930.1Re-query CCDS DB by GeneID:69060See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29930.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057270.8 ENSMUSP00000056377.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057270.8Link to Ensembl Protein Viewer:ENSMUSP00000056377.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000057270Re-query CCDS DB by Protein ID:ENSMUSP00000056377
Original member Current member NCBI NM_026925.4 NP_081201.2 Accepted alive Link to Nucleotide Sequence:NM_026925.4Link to Protein Sequence:NP_081201.2Re-query CCDS DB by Nucleotide ID:NM_026925Re-query CCDS DB by Protein ID:NP_081201Link to BLAST:NP_081201.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081201.2 465 Q6P8U6 465 100% 0 0

Chromosomal Locations for CCDS 29930.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 58670539 58670584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58671703 58671857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58673082 58673204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58673748 58673882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58675054 58675165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58676201 58676320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58676433 58676552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58677125 58677243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58679504 58679633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58680039 58680147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58680740 58680904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58681664 58681727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGCTAATGCTGTGGACATTTGCAGTGCTGCTGGGAGCAGTAGCTGGAAGGGAAGTTTGCTTCGACAAAC
TCGGCTGCTTCAGTGATGATGCCCCCTGGTCAGGAACTCTAGACAGACCCCTGAAAGCACTGCCCTGGAG
CCCAGCACAGATCAACACCCGCTTTCTCCTCTACACCAACGAGAATCCAGACAACTACCAGCTAATTACT
TCAGATGCATCAAACATCAGAAACTCCAATTTCCGAACAAACAGAAAAACCCGTATCATTATCCACGGCT
TCATCGACAAGGGAGAAGAAAACTGGCTATCTGACATGTGCAAGAACATGTTCCGAGTGGAGAGTGTGAA
CTGCATCTGTGTGGACTGGAAAGGCGGTTCCCGAACGACATATACCCAGGCTACCCAGAACGTCCGGGTC
GTGGGGGCAGAAGTGGCATTGTTGGTTAACGTTCTGCAGTCTGATCTGGGATACTCACTTAACAATGTCC
ACCTGATTGGCCACAGCCTGGGTTCCCACATTGCTGGGGAGGCTGGAAAGAGGACCTTTGGAGCCATTGG
AAGGATCACAGGGTTGGACCCCGCTGAGCCTTACTTCCAGGGCACCCCTGAAGAAGTCCGACTGGACCCC
ACCGATGCTCAGTTTGTGGACGCAATTCACACAGACGCCGGGCCCATTATCCCCAACTTAGGATTTGGAA
TGAGCCAGACTGTGGGTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAA
TATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAGGAACTCGAAACTTTGCTGCCTGTAACCAC
TTAAGAAGCTACAAGTTTTACACCGACAGCATCGTCAACCCAACTGGCTTTGCTGGGTTCTCCTGTAGCT
CTTACAGTCTTTTCACGGCAAATAAGTGCTTCCCATGTGGGAGTGGAGGATGCCCCCAGATGGGTCATTA
CGCTGACAGATATCCTGGGAAAACAAGCAGACTCTACCAGACATTTTACCTCAACACCGGTGATAAGAGC
AACTTCGCACGTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAG
TTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAAGGGCTCTCTGCAGCCAGGTAC
TTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAAGGTTAAATTTATTTGGTAC
AACAATGTGATCAACCCAACTCTACCCAAAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATGATGGCA
GAGTGTTCAACTTCTGTAGTCAAGAGACAGTGAGGGAAGACGTCCTGCTCACACTGTCTCCATGTTAG

Translation (465 aa):
MLMLWTFAVLLGAVAGREVCFDKLGCFSDDAPWSGTLDRPLKALPWSPAQINTRFLLYTNENPDNYQLIT
SDASNIRNSNFRTNRKTRIIIHGFIDKGEENWLSDMCKNMFRVESVNCICVDWKGGSRTTYTQATQNVRV
VGAEVALLVNVLQSDLGYSLNNVHLIGHSLGSHIAGEAGKRTFGAIGRITGLDPAEPYFQGTPEEVRLDP
TDAQFVDAIHTDAGPIIPNLGFGMSQTVGHLDFFPNGGIEMPGCQKNILSQIVDIDGIWEGTRNFAACNH
LRSYKFYTDSIVNPTGFAGFSCSSYSLFTANKCFPCGSGGCPQMGHYADRYPGKTSRLYQTFYLNTGDKS
NFARWRYQVTVTLSGQKVTGHILVSLFGNGGNSKQYEVFKGSLQPGTSHVNEFDSDVDVGDLQKVKFIWY
NNVINPTLPKVGASRITVERNDGRVFNFCSQETVREDVLLTLSPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH