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Report for CCDS29863.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29863.1 Under review, update Mus musculus 19 Fbxw4 23 108 98 CCDS HistoryNCBI Gene:30838Re-query CCDS DB by CCDS ID:29863.1Re-query CCDS DB by GeneID:30838See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29863.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046869.10 ENSMUSP00000036505.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046869.10Link to Ensembl Protein Viewer:ENSMUSP00000036505.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000046869Re-query CCDS DB by Protein ID:ENSMUSP00000036505
Original member NCBI NM_013907.2 NP_038935.1 Updated not alive Link to Nucleotide Sequence:NM_013907.2Link to Protein Sequence:NP_038935.1Re-query CCDS DB by Nucleotide ID:NM_013907Re-query CCDS DB by Protein ID:NP_038935
Current member NCBI NM_013907.3 NP_038935.2 Pending alive Link to Nucleotide Sequence:NM_013907.3Link to Protein Sequence:NP_038935.2Re-query CCDS DB by Nucleotide ID:NM_013907Re-query CCDS DB by Protein ID:NP_038935Link to BLAST:NP_038935.2

Chromosomal Locations for CCDS 29863.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 45578806 45578925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45579121 45579262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45579653 45579793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45591729 45591794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45630865 45630959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45635735 45635867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45636263 45636448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45640426 45640521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45659776 45660029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGGCGGAGGACGCGGCGGAGGATGCCGCAGCGGCGGCCGTGGAGCCGGCCACCCGTCCGGCCGCGGGGC
CCGCGCTCTGGCGCCTGCCGGAGGAGCTGCTGCTGCTCATCTGCTCCTACCTCGACACGCGGGCCCTCGG
CCGCCTGGCCCAAGTCTGCCGCTGGCTGCGGCGCTTCACCAGCTGCGACCTGCTCTGGCGCCCGATAGCC
CGGGCCTCGCTCAACACCGGCTTCACGCGGCTCGGCACCGACCTCATGGCAGGCATTCCAGTAAAGGAGC
GCGTGAAACTGTCTCAGAACTGGCGGCTGGGGCGCTGCCGAGATCGGATTCTGCTGAAGTGGAGATATAG
TCAGATGCCTTGGATGCAGCTACAGGATGCTTCTCTGTACCTATCACAGGCTAATTTCATCCTGGCCTAC
CAGTTCCGCCCGGATGGTGCAAGCTTGAACCGACGGCCCTTCAGAGTCTTCTCTGGGCATGATGAGGACG
TCTGTCACTTTGTGCTGGCCAACTCCCACATCGTCAGTGCAGGAGGAGACGGGAAGATCGGTGTTCACAA
GATCCACAGCACCTTCACTGTCAAGTACTCGGCTCACGAGCAGGAGGTGAACTGTGTGGACTGTAAAGGT
GGCATCATTGTGAGTGGCTCCCGGGACAGGACAGCCAAGGTATGGCCTCTGGCCTCGGGCCGGCTGGGGC
AGTGCTTACACACCATCCAGACCGAAGACCGAGTCTGGTCCATTGCTATCAGCCCATTACTCAGCTCTTT
TGTGACTGGAACAGCTTGTTGTGGGCACTTCTCACCTCTGAGAATCTGGGACCTCAACAGTGGGCAGCTG
ATCACACATCTGGGCAGTGACTTTCCCCCAGGGGCTGGGGTGCTAGATGTCATGTATGAGTCCCCCTCTA
CACTGCTGTCCTGTGGTTATGACACCTATGTTCGCTATTGGGACCTCCGCACAAGTACACGGAAATGTGT
CATGGAGTGGGAGGAGCCTCATGACAGTACCTTCTACTGCCTACAGACAGACGGCAACCACCTGCTGGCC
ACAGGCTCCTCCTACTACGGTCTCGTGCGGCTGTGGGACCGACGCCAGCGGGCTTGCCTGCATGCCTTCT
CATTGACGTCGACCCCACTCAGCAGCCCTGTGTACTGCCTGCGGTTCACCACTAGGCATCTCTATGCTGC
GCTGTCTTACAACCTCCACGTCTTAGACTTTCAGAACCCATGA

Translation (410 aa):
MAEDAAEDAAAAAVEPATRPAAGPALWRLPEELLLLICSYLDTRALGRLAQVCRWLRRFTSCDLLWRPIA
RASLNTGFTRLGTDLMAGIPVKERVKLSQNWRLGRCRDRILLKWRYSQMPWMQLQDASLYLSQANFILAY
QFRPDGASLNRRPFRVFSGHDEDVCHFVLANSHIVSAGGDGKIGVHKIHSTFTVKYSAHEQEVNCVDCKG
GIIVSGSRDRTAKVWPLASGRLGQCLHTIQTEDRVWSIAISPLLSSFVTGTACCGHFSPLRIWDLNSGQL
ITHLGSDFPPGAGVLDVMYESPSTLLSCGYDTYVRYWDLRTSTRKCVMEWEEPHDSTFYCLQTDGNHLLA
TGSSYYGLVRLWDRRQRACLHAFSLTSTPLSSPVYCLRFTTRHLYAALSYNLHVLDFQNP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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