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Report for CCDS29855.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29855.1 Public Mus musculus 19 Lzts2 23 108 98 CCDS HistoryNCBI Gene:226154Re-query CCDS DB by CCDS ID:29855.1Re-query CCDS DB by GeneID:226154See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29855.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039016.13 ENSMUSP00000045478.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039016.13Link to Ensembl Protein Viewer:ENSMUSP00000045478.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000039016Re-query CCDS DB by Protein ID:ENSMUSP00000045478
Original member Current member EBI ENSMUST00000178087.2 ENSMUSP00000136405.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178087.2Link to Ensembl Protein Viewer:ENSMUSP00000136405.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178087Re-query CCDS DB by Protein ID:ENSMUSP00000136405
Original member Current member EBI ENSMUST00000179108.8 ENSMUSP00000137571.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179108.8Link to Ensembl Protein Viewer:ENSMUSP00000137571.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179108Re-query CCDS DB by Protein ID:ENSMUSP00000137571
Original member Current member NCBI NM_001130525.1 NP_001123997.1 Accepted alive Link to Nucleotide Sequence:NM_001130525.1Link to Protein Sequence:NP_001123997.1Re-query CCDS DB by Nucleotide ID:NM_001130525Re-query CCDS DB by Protein ID:NP_001123997Link to BLAST:NP_001123997.1
Original member Current member NCBI NM_001130526.1 NP_001123998.1 Accepted alive Link to Nucleotide Sequence:NM_001130526.1Link to Protein Sequence:NP_001123998.1Re-query CCDS DB by Nucleotide ID:NM_001130526Re-query CCDS DB by Protein ID:NP_001123998Link to BLAST:NP_001123998.1
Original member Current member NCBI NM_145503.2 NP_663478.2 Accepted alive Link to Nucleotide Sequence:NM_145503.2Link to Protein Sequence:NP_663478.2Re-query CCDS DB by Nucleotide ID:NM_145503Re-query CCDS DB by Protein ID:NP_663478Link to BLAST:NP_663478.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123997.1 671 Q91YU6 671 100% 0 0
NP_001123998.1 671 Q91YU6 671 100% 0 0
NP_663478.2 671 Q91YU6 671 100% 0 0

Chromosomal Locations for CCDS 29855.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 45021429 45021836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45023542 45024204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45024719 45024979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 45025802 45026485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2016 nt):
ATGGCCATTGTGCACACTCTGCCAGTGCCTCTGGAGCCCGCACGTGAGACAGCCACTGCCCCCAAAACTC
CAGCAATGGGCAGCGTGAGCAGTCTTATCTCAGGCCGGCCCTGCCCCGGGGGACCTGCTCCTCAACGACA
TCATGGTGTCCCTGGGCCCACCTTCTTCCGCCAGCAGGATGGGCTGCTACCGGGTGGCTACGAGGCACAG
GAACCGCTCTGCCCGGCTGTGCCACCGAGGAAGGCTGTCCCAGGCAATAGCTTTACCTATGTCAATGAGG
ACTTCCGGACAGAGTCTCCTCCCAGCCCCAGCAGTGATGTTGAAGATCCCCGGGAACATCAGGCACACAA
TGCCCACCTCCGTGGGCCCCCACCAAAGCTCATCCCTGTCTCTGGAAAGCTGGAGAAGAATATGGAGAAG
ATCCTGATCCGGCCAACAGCCTTCAAGCCAGTGCTACCCAAACCTCGGGGGGCGCCATCCCTACCCGGCT
TCCTTGGTCCTCGAGCTGCTGGGCTATCTGGGAGCCAGGGCAGCCTGACACAGCTGTTTGGGGGGCCAGC
CTCTTCCTCCTCCTCTTCCTCTTCCTCCTCTGCTGCTGACAAACCCTTGGCACTGAGTGGTTGGGCCAGT
GGCTGCCCTTCAGGAACGCTGTCAGACTCTGGCCGAAATTCTTTATCCAGCTTGCCCACCTACAGCACTG
GAGGTGCCGAGCCAACCACCAACTCCCCAGGTGGGCACCTGCCCTCCCACGGCCCTGGCCGAGGGGCACT
GCCTGGTCCAGCCCGAGGGGTCCCTACTGGGCCCTCCCATTCAGACAGTGGCCGGTCCTCCTCCAGCAAA
AGCACGGGCTCCTTGGGGGGTCGTGTAGCTGGGGGGCTCTTGGGCAGTGGTGCCCGGGCCTCCCCTGGCA
GCAGTTCTGGTGGAGACCGCTCTCCACCCCCTCCACCACCTCCACCCCCTTCGGATGAGGCCTTGCTACA
CTGTGTCCTGGAAGGGAAGCTCAGAGACCGCGAGGCAGAGCTGCAGCAGCTGCGGGACAGTATGGATGAG
AGTGAGGCCACAGTGTGTCAGGCATTCGGGGCACGGCAGCGGCGCTGGCCACGGGAGCGAGGGGAGGACT
GTGCAGCCCAGGCGCAGCAGGCCACGCAGCGCGTCCAGCGGGCCCAACAGCTGCTGCAGCTGCAGGTGTT
CCAGCTGCAGCAAGAGAAGCGCCAGTTGCAGGATGACTTTGCCCAGCTGCTACAGGAGCGGGAACAGCTG
GAGCGCCGCTGTGCCACTTTTGAACGGGAGCAGCGGGAACTCGGGCCACGGCTGGAGGAGACCAAATGGG
AGGTGTGTCAGAAATCAGGTGAGATCTCCCTGCTGAAGCAGCAACTGAAGGAATCTCAGGCAGAGCTGGT
CCAGAAGGGCAGTGAGCTGGTGGCGCTGCGGGTGGCCCTCCGTGAGGCCCGGGCCACCTTGCGGGTCAGT
GAGGGCCGTGCCAGGGGCCTGCAGGAGGCAGCCCGAGCTCGGGAGCAGGAGCTGGAGGCCTGCTCGCAGG
AGCTTCAGCGGTACCGCCAGGAGGCTGAGCGGCTCCGGGAGAAGGCCGGGCATTTGGATGCCGAAGCATC
GGGACTCCGGGATCCCCCTGTACCCCCTGCCACCACCGACCCGTTCCTCCTGGCAGAGAGTGATGAGGCC
AAGGTGCAGCGGGCAGCGGCTGGGGCAGGGGGTAGCCTGCGGGCTCAGGTGGAACGGCTGCGCCAAGAAC
TGCAGCGGGAGCAGCGGCGAGGGGACGAGCAACGGGACAGCTTTGAGGGGGAGCGGCTGGCCTGGCAGGC
AGAGAAGGAACAGGTGATCCGCTACCAGAAGCAGCTGCAGCACAACTATATCCAGATGTACCGGCGTAAC
CGGCAGCTGGAGCAGGAACTGCAGCAACTGAGCCTGGAGCTGGAGGCCCGCGAGCTTGCGGATTTGGGCC
TGGCGGAGTCGGCCCCTTGCATCTGTCTGGAGGAGATCACTGCCACTGAGATCTAG

Translation (671 aa):
MAIVHTLPVPLEPARETATAPKTPAMGSVSSLISGRPCPGGPAPQRHHGVPGPTFFRQQDGLLPGGYEAQ
EPLCPAVPPRKAVPGNSFTYVNEDFRTESPPSPSSDVEDPREHQAHNAHLRGPPPKLIPVSGKLEKNMEK
ILIRPTAFKPVLPKPRGAPSLPGFLGPRAAGLSGSQGSLTQLFGGPASSSSSSSSSSAADKPLALSGWAS
GCPSGTLSDSGRNSLSSLPTYSTGGAEPTTNSPGGHLPSHGPGRGALPGPARGVPTGPSHSDSGRSSSSK
STGSLGGRVAGGLLGSGARASPGSSSGGDRSPPPPPPPPPSDEALLHCVLEGKLRDREAELQQLRDSMDE
SEATVCQAFGARQRRWPRERGEDCAAQAQQATQRVQRAQQLLQLQVFQLQQEKRQLQDDFAQLLQEREQL
ERRCATFEREQRELGPRLEETKWEVCQKSGEISLLKQQLKESQAELVQKGSELVALRVALREARATLRVS
EGRARGLQEAARAREQELEACSQELQRYRQEAERLREKAGHLDAEASGLRDPPVPPATTDPFLLAESDEA
KVQRAAAGAGGSLRAQVERLRQELQREQRRGDEQRDSFEGERLAWQAEKEQVIRYQKQLQHNYIQMYRRN
RQLEQELQQLSLELEARELADLGLAESAPCICLEEITATEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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