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Report for CCDS29834.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29834.1 Public Mus musculus 19 Slc25a28 23 108 98 CCDS HistoryNCBI Gene:246696Re-query CCDS DB by CCDS ID:29834.1Re-query CCDS DB by GeneID:246696See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29834.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046038.8 ENSMUSP00000036913.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046038.8Link to Ensembl Protein Viewer:ENSMUSP00000036913.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000046038Re-query CCDS DB by Protein ID:ENSMUSP00000036913
Original member Current member NCBI NM_145156.1 NP_660138.1 Accepted alive Link to Nucleotide Sequence:NM_145156.1Link to Protein Sequence:NP_660138.1Re-query CCDS DB by Nucleotide ID:NM_145156Re-query CCDS DB by Protein ID:NP_660138Link to BLAST:NP_660138.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660138.1 364 Q8R0Z5-1 364 100% 0 0

Chromosomal Locations for CCDS 29834.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 43664126 43664643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43665772 43665828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43666915 43667143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43674476 43674766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGGAGTTGGAGGGGCGGAGTGCAGGCGGCGTGGCGGGAGGACCAGCTGCTGGGCCCGGGCGGAGCCCCG
GGGAGTCGGCGCTGCTGGACGGGTGGCTGCAGCGGGGCGTGGGCCGGGGGGCCGGCGGCGGGGAGGCGGG
GGCCTATCAGCCCCCTGTACGGCTGGATCCGGAGTCCGGCCCGGAATACGAAGCGCTGCCGGCTGGAGCC
ACTGTCACCACGCACATGGTGGCGGGCGCCGTGGCAGGGATCCTGGAGCATTGCGTGATGTACCCGATCG
ACTGCGTCAAGACCCGGATGCAGAGCCTACAGCCTGACCCAGCCGCCCGCTATCGGAACGTGTTGGAGGC
TCTCTGGAGAATCATGAGGACAGAGGGCCTGTGGAGGCCCATGCGGGGGCTGAACGTCACAGCAACAGGC
GCGGGGCCTGCCCACGCCCTCTATTTTGCCTGCTACGAAAAGTTAAAAAAGACATTGAGTGACGTAATCC
ACCCAGGGGGCAATAGCCATATTGCCAATGGTGCAGCCGGATGTGTGGCGACATTACTTCATGATGCAGC
CATGAATCCAGCGGAAGTCGTCAAGCAGAGGATGCAGATGTACAACTCGCCGTACCACCGCGTGACAGAC
TGTGTTCGGGCAGTGTGGCAAAATGAAGGGGCCGGGGCCTTTTACCGCAGCTACACGACCCAGCTGACCA
TGAATGTCCCCTTCCAAGCCATTCACTTCATGACCTATGAGTTCCTGCAAGAGCACTTTAACCCCCAGAG
ACGGTACAACCCCAGCTCCCATGTGCTCTGTGGGGCCTGCGCAGGAGCAGTAGCTGCCGCCGCCACAACC
CCACTGGACGTTTGTAAAACACTGCTCAACACCCAGGAATCCCTGGCTTTGAACTCAAACATTACTGGAC
ACATCACAGGCATGGCTAGTGCCTTCAGGACGGTCTATCAAGTAGGCGGGGTGACTGCTTACTTCCGAGG
GGTGCAGGCCAGAGTCATTTACCAGATCCCCTCCACAGCCATCGCATGGTCTGTGTATGAATTTTTCAAA
TACCTAATCACAAAGCGGCAAGAGGAATGGAGGGCAGGCAAGTGA

Translation (364 aa):
MELEGRSAGGVAGGPAAGPGRSPGESALLDGWLQRGVGRGAGGGEAGAYQPPVRLDPESGPEYEALPAGA
TVTTHMVAGAVAGILEHCVMYPIDCVKTRMQSLQPDPAARYRNVLEALWRIMRTEGLWRPMRGLNVTATG
AGPAHALYFACYEKLKKTLSDVIHPGGNSHIANGAAGCVATLLHDAAMNPAEVVKQRMQMYNSPYHRVTD
CVRAVWQNEGAGAFYRSYTTQLTMNVPFQAIHFMTYEFLQEHFNPQRRYNPSSHVLCGACAGAVAAAATT
PLDVCKTLLNTQESLALNSNITGHITGMASAFRTVYQVGGVTAYFRGVQARVIYQIPSTAIAWSVYEFFK
YLITKRQEEWRAGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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