NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29814.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29814.1 Public Mus musculus 19 Rrp12 23 108 98 CCDS HistoryNCBI Gene:107094Re-query CCDS DB by CCDS ID:29814.1Re-query CCDS DB by GeneID:107094See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29814.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038677.4 ENSMUSP00000039853.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038677.4Link to Ensembl Protein Viewer:ENSMUSP00000039853.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000038677Re-query CCDS DB by Protein ID:ENSMUSP00000039853
Original member Current member NCBI NM_199447.2 NP_955518.1 Accepted alive Link to Nucleotide Sequence:NM_199447.2Link to Protein Sequence:NP_955518.1Re-query CCDS DB by Nucleotide ID:NM_199447Re-query CCDS DB by Protein ID:NP_955518Link to BLAST:NP_955518.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955518.1 1295 Q6P5B0 1295 100% 0 0

Chromosomal Locations for CCDS 29814.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 41863207 41863312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41865172 41865254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41865521 41865588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41866706 41866772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41868770 41868819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41870810 41870935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41871135 41871304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41871422 41871589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41871733 41871824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41872909 41873066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41873743 41873850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41874236 41874341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41874529 41874609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41874717 41874875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41876535 41876628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41877101 41877168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41877336 41877490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41877784 41877946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41878029 41878093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41880102 41880223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41880359 41880501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41882159 41882273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41883423 41883520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41883713 41883824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41885647 41885738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41886087 41886185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41886800 41886927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41887011 41887149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41889766 41889882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41890069 41890174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41891084 41891160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41892538 41892621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41895148 41895377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41895939 41896077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3888 nt):
ATGGGTCGCTCGGGGAAATTGCCCTCTGGTGTCTCGGCCAAGTTGAAGCGCTGGAAGAAAGGCCACAGCA
GCGACAGCAACCCCGCCACTTGCCGCCATCGCCAGGCCGCTCGGAGCCGCTTCTTCAGCCGCCCGTCAGG
AAAGAGCGACCTGACTGTTGATGCTGTGAAGTTGCATAATGAGCTGCAGTCGGGGACCCTGAGCCTGGGC
AAAAGCCAAGCCCCTGAGACGACCATGGACCAAGATCCAGAGGTGGCTTTCACCGAGAAGTCCTCGGGCA
CGTTTCTGAGTGGCTTGTCTGACTGTACAAATGTCACTTTCAGCAAAGTGCAGCGCTTCTGGGAATCCAA
CTCAGCTGCTCACAAGGAGATCTGCGCTGTGCTGGCTGCTGTTACAGAGGTGATTCGATCCCAGGGAGGC
AAGGAGACGGAGACCGAGTACTTTGCTGCTCTGATGACAACAATGGAAGCAGTGGAGTCCCCAGAGTCAC
TGGCTGCCGTTGCATACCTATTGAACCTTGTCCTGAAGCGGGTGCCAAGTCCTGTGCTCATGAAGAAGTT
CTCTGATACCTCCAAAGCCTTCATGGACATCATGTCTGCGCAGGCGAGCAGTGGCTCCACCTCTGCTCTC
CGATGGGTCCTCTCCTGCCTGGCCATCCTCCTTCGGAAGCAAGACCTGGAGGCCTGGGGCTATCCCATCA
CCCTTCAGGTGTACCATGGACTGCTGAGCTTCACCGTGCATGCCAAGCCGAAGATCCGTAAGGCTGCTCA
GCACGGAGTGTGCTCAGTTCTCAAGGGCAGTGACTTCATGTTTGGTGAAAAGGCCCCTGCCCATCATCCT
GCTGCCGTCTCCACTGCCAAGTTCTGCATCCAGGAGATTGAGAAGTCTGGAGGTTCCAAAGAGGCCACCA
CCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTG
CAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTGCTTGTGACAGCCTGTGCCATGCAGGCCTTC
CATAACCTCTTCCATGCCAAGCCCAGCCCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACGG
CACTATATGACTACGTTCCCAGTGAGAATGATTTACAGCCCCTGCTGGCCTGGCTTAAGGTCATGGAGAA
AGCCCACATCAACCTGGTCAGGCTGCAGCGAGACCTGGGGCTAGGCCATCTTGCTCGATTTTTCGGAACC
GCAGTGACCTGTCTTCTCTCGCCTCATTCACAAGTGGCGGCGGCTGCTACCCAGACTCTCAAGGAGATCC
TGAAGGAGTGTGTGGCTCCACACATTGCTGACATTGGCTCTGTGACCTCTTCAGCCTCAGGTCCTCCCCA
GTACATCACTAAGATGTTCAGGGCAGTGGAAGAGGGCCTCACATACAAATTTCATGCAGCCTGGAGCTCT
GTGCTGCAGCTCCTGGGGGTCTTCTTTGAAGCTTGCGGAAAGCAGGCCCATCCTGTGATGAAGAAGTGCC
TCCAGTCCCTGTGTGACCTGCGCCTCTCTCCTCACTTCCCCCACACAGCAGCCCTGGACCAGGCTGTAGG
GGCTGCAGTGACCAGCATGGGTCCCGAGGTGGTGTTGCAGGCCGTGCCCTTGGAAATCGATGGCTCTGAG
GAGACTCTGGATTTCCCACGGAGCTGGCTGCTGCCTGTCATCCGGGATCATGTTCGGGAAACCAGGCTTG
GTTTCTTCACCACTTACTTCTTGCCCTTGGCCACCACTCTTAAGAGAAAAGCAATGGACCTGGCTCAGGC
AGGCAGCACAGTGGAGTCGAAGATTTATGATACACTCCAGTGGCAGATCTGGACCCTCCTGCCTGGGTTC
TGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATG
AACGCCCAGACCTGAGGGTCACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGA
GGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCAATCCTCTTCAACCTGTATGGGCAG
CCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCA
TAACTGAGGCTCAGTTGGTGAATAGCTTCCTGGAAAAAGCCACCGAGAAGGTTCTCGATCCTGCCAGCTC
TGATTTCACCAGATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAAGCTGCCATC
AGTAAGCTATACTCTACCATCCGGCCCTACCTTGAGAGCAAGGTCCACGGTGTACAGAAGAAGGCCTACC
GCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGA
TCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGGCCCCGTTTGAAGTGC
CTCATACATATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAGGTGA
TCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATGGGCCA
TGCTTTCCTGCGATTTGGCTCCAACCAGGAAGACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGC
CTTCTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG
GGCTGATGGGGACCAGCACAGTGGAGCAGCTCCTGGAGAACGTGTGCCTGCTGCTGGCCTCTCGAACCCG
TGATGTGGTCAAGTCCGCGCTAGGCTTCATCAAGGTTGCTGTGGTGGTCATGGACGTGGTGCACCTTGCT
AAGCATGTGCAGCTAGTGATGGAAGCCATTGGGAAGTTGTCAGATGACATGCGACGGCACTTCCGGATGA
AGCTTCGGAACCTGTTCATCAAGTTCACCCGCAAGTTTGGATTCGAGTTGGTGAAGGGTCTGCTACCCGC
AGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGC
CAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAGCA
TTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCG
GAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTG
GATCCCAAGGTGGCCCATCGAGTCCTTGCCACCCAGCCTGGGCCTGGGCGGGGCAAGAAGAGGGACCATG
GCTTCAAGTTGAGTGCTGATGGCCGGCTGATCATACGGGAGGAGGAAGATGGAAACAAGGTGGAGGAAGA
AGATGGCACTAAAGGGGAAGATGAAGACATGACCGATGCGATGGAGGATGCCAGTGTGAGAAGTAAAAAG
AAGCTTAAGCGGCAGAGGGAGGACGAGGAGGATGAGCTGGAGATCCCACCTCGGTACCAAGCTGGAGGCT
CTGGCATCCATCGCCCTGTGGCTAAGAAGGCTGCACCTGGAGCTGAATACAAGGCCAAGAAGGCAAAAGG
CGATGTAAAGAAGAAGGGCCGCCTGGATCCCTATGCGTACGTTCCACTCAACAGATCCAAGCTCAACCGC
AGGAAGAAGGTGAAGCTCCAGGGGCAGTTTAAAGGTCTGGTGAAAGCCACCCAGCGGGGATCCCAGGCGG
GACACAAACTCCGCAGAAAGGATCGGCGGCGGCCCTGA

Translation (1295 aa):
MGRSGKLPSGVSAKLKRWKKGHSSDSNPATCRHRQAARSRFFSRPSGKSDLTVDAVKLHNELQSGTLSLG
KSQAPETTMDQDPEVAFTEKSSGTFLSGLSDCTNVTFSKVQRFWESNSAAHKEICAVLAAVTEVIRSQGG
KETETEYFAALMTTMEAVESPESLAAVAYLLNLVLKRVPSPVLMKKFSDTSKAFMDIMSAQASSGSTSAL
RWVLSCLAILLRKQDLEAWGYPITLQVYHGLLSFTVHAKPKIRKAAQHGVCSVLKGSDFMFGEKAPAHHP
AAVSTAKFCIQEIEKSGGSKEATTTLHMLTLLKDMLPCFPEGLVKSCSETLLRVMTLNHVLVTACAMQAF
HNLFHAKPSPSTLSAELNAQIVTALYDYVPSENDLQPLLAWLKVMEKAHINLVRLQRDLGLGHLARFFGT
AVTCLLSPHSQVAAAATQTLKEILKECVAPHIADIGSVTSSASGPPQYITKMFRAVEEGLTYKFHAAWSS
VLQLLGVFFEACGKQAHPVMKKCLQSLCDLRLSPHFPHTAALDQAVGAAVTSMGPEVVLQAVPLEIDGSE
ETLDFPRSWLLPVIRDHVRETRLGFFTTYFLPLATTLKRKAMDLAQAGSTVESKIYDTLQWQIWTLLPGF
CTRPTDVAASFKGLARTLGTAINERPDLRVTVCQALRTLITKGCEAEADRAEVSRFAKNFLPILFNLYGQ
PVAAGEAAAPRRAVLETIKTYLTITEAQLVNSFLEKATEKVLDPASSDFTRLSVLDLVVALAPYSDEAAI
SKLYSTIRPYLESKVHGVQKKAYRVLEEVCASSQGPAARFVQSHLDDLKKTLLDSLRTTSSPAKRPRLKC
LIHIVKTLSAEHEEFIAALIPEVILCTKEVSVGARKSAFTLLVEMGHAFLRFGSNQEDALQRYLVLIYPG
LLGAVTTVSCSILALTHLLFEFKGLMGTSTVEQLLENVCLLLASRTRDVVKSALGFIKVAVVVMDVVHLA
KHVQLVMEAIGKLSDDMRRHFRMKLRNLFIKFTRKFGFELVKGLLPAEYHKVLINIRKAETRAKKHRALS
QAAVEEEEEEEEEEEPVQSKGDSIEEILADSEDEDEEEERGRGKEQRKLARQRSRAWLKEGGGDEPLNFL
DPKVAHRVLATQPGPGRGKKRDHGFKLSADGRLIIREEEDGNKVEEEDGTKGEDEDMTDAMEDASVRSKK
KLKRQREDEEDELEIPPRYQAGGSGIHRPVAKKAAPGAEYKAKKAKGDVKKKGRLDPYAYVPLNRSKLNR
RKKVKLQGQFKGLVKATQRGSQAGHKLRRKDRRRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH