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Report for CCDS29715.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29715.1 Public Mus musculus 19 Foxd4 23 108 98 CCDS HistoryNCBI Gene:14237Re-query CCDS DB by CCDS ID:29715.1Re-query CCDS DB by GeneID:14237See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29715.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058600.3 ENSMUSP00000058575.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058600.3Link to Ensembl Protein Viewer:ENSMUSP00000058575.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000058600Re-query CCDS DB by Protein ID:ENSMUSP00000058575
Original member NCBI NM_008022.2 NP_032048.1 Updated not alive Link to Nucleotide Sequence:NM_008022.2Link to Protein Sequence:NP_032048.1Re-query CCDS DB by Nucleotide ID:NM_008022Re-query CCDS DB by Protein ID:NP_032048
Current member NCBI NM_008022.3 NP_032048.1 Accepted alive Link to Nucleotide Sequence:NM_008022.3Link to Protein Sequence:NP_032048.1Re-query CCDS DB by Nucleotide ID:NM_008022Re-query CCDS DB by Protein ID:NP_032048Link to BLAST:NP_032048.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032048.1 444 Q60688 444 100% 0 0

Chromosomal Locations for CCDS 29715.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 24899500 24900834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1335 nt):
ATGAACTCAGCAAGAGCTGGGCACCTTCGTTCCACTCCACCGCCCAGTCCTCTAAGTTCCGACCAGGATG
AGGTGGAGATCGACGTGCTGGCAGAGGAGGAAGATGGAGATCAGACGGAAGAAGAGGATGACGAGGAGGA
GAGCCATAAGTGCCTGGAGCGATCCCTGCAGAGGCCCGGAGCCCGCACTCTTGCAGGGAGGAGCGCGGGG
GACTGCGGCGATCTGAGTAACTCCTCCGGGTTCCTCCGCAAGTTCCGAGCACCACGGACCCCGGCGACCA
CCACAGCCGACGGCCCGCAGCCCGCCAAACCCCCGTACTCCTACATCGCGCTCATCACCATGGCCATCCT
GCAGAGCCCGCACAAGCGCCTGACGCTCAGCGGTATCTGCGCCTTCATCAGCGGCCGCTTCCCCTATTAC
CGCCGTAAGTTCCCCGCCTGGCAGAACAGCATCCGCCACAACCTGTCGCTCAACGACTGCTTCGTCAAGA
TCCCTCGCGAGCCGGGCCACCCGGGCAAGGGCAACTATTGGAGCCTGGACCCCGCCTCCCAGGACATGTT
CGACAACGGCAGCTTCCTCCGGCGCAGGAAGCGCTTCAAGCGCCACCACCCGCCCTCGGGAGGCCACCCG
CACTGCCCTTTCCCTCCACCCGCTGTGCCCGCCACCCTGCACGTCTCCCAGCCCAGCCTCCTGCTCCGCT
ACTCTGCCCCACCACAGCCTAACCTCGCAGCTCATCCCGCTGCCCCGCCTCGGAGTCACCCGTGCGCCCC
GCTGCATCCGCATCCCATGCGCTACCTGCTGCTCGCGGCCCCGGCCTATGGCGACAACCCTAGAAAAGCG
GAAGGCGCGGACCCCGCCACCCCCTTAGCCATTCCCGCGCTGCAGCCCGTACTGGGTTCCCAGCCTTGGG
AGAGAGACCAGAGCTCTGGAACTCGGTCCGGACGCGGGTGCGCTTCGTTCACCATCGAGAGCATCATGCA
GGGGGTTACAGGAGGAGGAACTGGGTCTGCGCAGAGTCCGTCCTTTGCTCCGTGGAGCTACTGCCACCTG
CTGCAACATCCACCGTGCCTGCTGCACCCCCAGGCCGCTTCCCCTTTGTTTCACATGTCCGCAGGTTCCC
GGACAATATTGCCTCAGCAGCCGCAACCGCCGCTGCCGCTGCAGCAAGAACAGCATCACTGTGCCATTAG
CTGCGCTCCCGGTAAAGGCGTGCGGTTAGGCCAGCACCTGTCCGCCGTTGCGGCGCTGCTGAGGCAACAG
CCTGCAGCTGACGACGGTAGGCTGACAACCCTGGCCGCTCTTTCGGGCCGAGAGGGGACCTTGCCCGAAT
TTTAA

Translation (444 aa):
MNSARAGHLRSTPPPSPLSSDQDEVEIDVLAEEEDGDQTEEEDDEEESHKCLERSLQRPGARTLAGRSAG
DCGDLSNSSGFLRKFRAPRTPATTTADGPQPAKPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYY
RRKFPAWQNSIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGSFLRRRKRFKRHHPPSGGHP
HCPFPPPAVPATLHVSQPSLLLRYSAPPQPNLAAHPAAPPRSHPCAPLHPHPMRYLLLAAPAYGDNPRKA
EGADPATPLAIPALQPVLGSQPWERDQSSGTRSGRGCASFTIESIMQGVTGGGTGSAQSPSFAPWSYCHL
LQHPPCLLHPQAASPLFHMSAGSRTILPQQPQPPLPLQQEQHHCAISCAPGKGVRLGQHLSAVAALLRQQ
PAADDGRLTTLAALSGREGTLPEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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