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Report for CCDS29660.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29660.1 Public Mus musculus 19 Or5b117 23 108 98 CCDS HistoryNCBI Gene:258685Re-query CCDS DB by CCDS ID:29660.1Re-query CCDS DB by GeneID:258685See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29660.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077501.2 ENSMUSP00000076707.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077501.2Link to Ensembl Protein Viewer:ENSMUSP00000076707.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000077501Re-query CCDS DB by Protein ID:ENSMUSP00000076707
Original member Current member EBI ENSMUST00000096201.3 ENSMUSP00000093915.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096201.3Link to Ensembl Protein Viewer:ENSMUSP00000093915.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000096201Re-query CCDS DB by Protein ID:ENSMUSP00000093915
Original member Current member NCBI NM_146690.2 NP_666901.2 Accepted alive Link to Nucleotide Sequence:NM_146690.2Link to Protein Sequence:NP_666901.2Re-query CCDS DB by Nucleotide ID:NM_146690Re-query CCDS DB by Protein ID:NP_666901Link to BLAST:NP_666901.2

Chromosomal Locations for CCDS 29660.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 13453571 13454515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGAGAATATTTCAGAGGTTACTGAATTTATTCTCGTGGGGATAACAGATGCTCCAGAGCTTCAGATCC
CTTTATTTATTATCTTCACTCTCATTTATTTGATCGCACTGTTTGGAAATCTTGGGATGATCATGTTGAT
TCTGCTGGACTCCCGACTCCACACTCCTATGTACTTTTTCCTCTGTAACCTCTCCCTGGTGGACTGTGTT
TATGCCTCAGCTGTCACTCCCAAGGTGATGGAAGGGTTTCTCACAGGAAATAAGATAATATCCTACAATG
CATGTGCTGCCCAGATGTTCTTCTTTGTAGCCTTTATTGCTATTGAAAGTTTGATCCTTGCCTCAATGGC
CTATGACCGTCATGCAGCAGTGTGCAATCCCCTGCACTACACTACCATCATGACAAGTACCACCTGTATT
CTGATTGTCACCTGCTGCTACATGTGTGGAATCTTGCAATCCTCTATTCATGTTGCTCTTGCATTTTGTC
TTTCCTTCTGTAATTCCAATGTGATTAATCACTTTTTCTGTGACATTCCCCCACTGCTGGAAATTTCTTG
TTCTGATACCTATACAAATGAGATTACAGTCCTTATCTTGGGAACTTGTGATGGTATTTTAACTCTCTTG
GTTATCTTAAACACTTACTTGCTTATTTTCATTGCTATCCTGAGAATGCGTTCAGTTGAAGCACAGAGGA
AGGCATTCTCTACCTGTGCATCTCATCTCATCACTGTATCCATCTTCTTTGGGTCAACTTTGTTCATGTA
TTTACAGCCCAGTTCTAATCATTCTATGAACACAGACAAAATTGCATCTGTGTTTTACACTATGGTGATT
CCTATGCTGAACCCTGTCGTATACAGTTTAAGGAACAAGGAGGTAAAAAATGCATTTAAGAAGGTTGTTG
GAAAATTAATGACTTCACTTCAGTTAGTCAATTAA

Translation (314 aa):
MENISEVTEFILVGITDAPELQIPLFIIFTLIYLIALFGNLGMIMLILLDSRLHTPMYFFLCNLSLVDCV
YASAVTPKVMEGFLTGNKIISYNACAAQMFFFVAFIAIESLILASMAYDRHAAVCNPLHYTTIMTSTTCI
LIVTCCYMCGILQSSIHVALAFCLSFCNSNVINHFFCDIPPLLEISCSDTYTNEITVLILGTCDGILTLL
VILNTYLLIFIAILRMRSVEAQRKAFSTCASHLITVSIFFGSTLFMYLQPSSNHSMNTDKIASVFYTMVI
PMLNPVVYSLRNKEVKNAFKKVVGKLMTSLQLVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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