NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29585.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29585.1 Public Mus musculus 19 Vps37c 23 108 98 CCDS HistoryNCBI Gene:107305Re-query CCDS DB by CCDS ID:29585.1Re-query CCDS DB by GeneID:107305See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29585.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087951.6 ENSMUSP00000085264.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087951.6Link to Ensembl Protein Viewer:ENSMUSP00000085264.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000087951Re-query CCDS DB by Protein ID:ENSMUSP00000085264
Original member Current member EBI ENSMUST00000235927.1 ENSMUSP00000158500.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235927.1Link to Ensembl Protein Viewer:ENSMUSP00000158500.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235927Re-query CCDS DB by Protein ID:ENSMUSP00000158500
Original member Current member NCBI NM_001361958.1 NP_001348887.1 Accepted alive Link to Nucleotide Sequence:NM_001361958.1Link to Protein Sequence:NP_001348887.1Re-query CCDS DB by Nucleotide ID:NM_001361958Re-query CCDS DB by Protein ID:NP_001348887Link to BLAST:NP_001348887.1
Original member Current member NCBI NM_001361961.1 NP_001348890.1 Accepted alive Link to Nucleotide Sequence:NM_001361961.1Link to Protein Sequence:NP_001348890.1Re-query CCDS DB by Nucleotide ID:NM_001361961Re-query CCDS DB by Protein ID:NP_001348890Link to BLAST:NP_001348890.1
Original member Current member NCBI NM_001361962.1 NP_001348891.1 Accepted alive Link to Nucleotide Sequence:NM_001361962.1Link to Protein Sequence:NP_001348891.1Re-query CCDS DB by Nucleotide ID:NM_001361962Re-query CCDS DB by Protein ID:NP_001348891Link to BLAST:NP_001348891.1
Original member Current member NCBI NM_001361964.1 NP_001348893.1 Accepted alive Link to Nucleotide Sequence:NM_001361964.1Link to Protein Sequence:NP_001348893.1Re-query CCDS DB by Nucleotide ID:NM_001361964Re-query CCDS DB by Protein ID:NP_001348893Link to BLAST:NP_001348893.1
Original member Current member NCBI NM_181403.3 NP_852068.1 Accepted alive Link to Nucleotide Sequence:NM_181403.3Link to Protein Sequence:NP_852068.1Re-query CCDS DB by Nucleotide ID:NM_181403Re-query CCDS DB by Protein ID:NP_852068Link to BLAST:NP_852068.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348887.1 352 Q8R105-1 352 100% 0 0
NP_001348890.1 352 Q8R105-1 352 100% 0 0
NP_001348891.1 352 Q8R105-1 352 100% 0 0
NP_001348893.1 352 Q8R105-1 352 100% 0 0
NP_852068.1 352 Q8R105-1 352 100% 0 0

Chromosomal Locations for CCDS 29585.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10706216 10706308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10710270 10710441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10711271 10711353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10712524 10713234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGGAGGGGCTGAAAGACAAGACCCTGCAGGAGCTGGAGGAAATGCAGAATGACCCAGAAGCCATTGCCC
GGCTAGCCTTGGAGTCTCCTGAGGTTCAGGACCTGCAGTTAGAACGAGAGATGGCACTGGCCACGAACCG
GAGCCTGGCAGAGCAGAACCTGGAGTTCCAAGGTCCCCTGGAAATCAGCCGCTCTAACCTCTCAGACAAA
TACCAGGAGCTGCGGAAGCTTGTGGAGCGGTGCCAGGAGCAGAAAGCCAAGCTGGAGAAATTTTCCTCGG
CACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAGGC
CATGGCTGAGAAATTCCTGGAAGGTGAGGTGCCGTTGGAAACGTTCTTAGAGTCCTTTTCCTCCATGAGG
ACACTGCTGCACCTGCGTCGAGTCCGCGTAGAGAAGCTCCAGGACGTGGTGAGGCGGCCTCGAGCTTTGC
CGGAGCTGGCTGGAGATGTCCCTCCAAAGCGCCCGCCACCCCCACGCCCAGTACCCCAGGCGACACCGCC
TGAGACTGAAGAACAGCCTCCACAGCCCTCTGTAGTGACTCCCTACCCTTTGCCCTACAGCCCATCCCCA
GGCTTGCCTGTGGGCCCGACAGCCCAGGGAGCCCTGCAGCCAGCCCCCTTCCCTGTGGTGGCCCAGCCTT
CCTCCTATGGTGGGCCTCTGGGTCCTTACCCATCACCTCATCCAGGACCCAGGGCCATGGTGGGTTACTC
TTGGTCTCCACAGAGGAGTGGCCCGCCCCAGCCTGGCTATCCTACGGCTCCAACTAGTACCTCTGGTCCA
GGGTACCCCTTAGTGGGGGGCCGAACCCCTGGTCCTGGTTATCCTCAGCAGTCCCCCTACCTCCCGTCAG
GAAACAAACCTCCCTACCCAACACAACCTCAGCTCCCGGGCTTCCCAGGACAGCCCCAGCCTCCTGTGCC
CCCTCAACCTCCATACCCTCCTGGGACAACCCCTTCCTATGGCTTCCACCCTCCAGGGCCTGCCTGGCCT
AGGTATTAG

Translation (352 aa):
MEGLKDKTLQELEEMQNDPEAIARLALESPEVQDLQLEREMALATNRSLAEQNLEFQGPLEISRSNLSDK
YQELRKLVERCQEQKAKLEKFSSALQPGTLLDLLQIEGMKIEEESEAMAEKFLEGEVPLETFLESFSSMR
TLLHLRRVRVEKLQDVVRRPRALPELAGDVPPKRPPPPRPVPQATPPETEEQPPQPSVVTPYPLPYSPSP
GLPVGPTAQGALQPAPFPVVAQPSSYGGPLGPYPSPHPGPRAMVGYSWSPQRSGPPQPGYPTAPTSTSGP
GYPLVGGRTPGPGYPQQSPYLPSGNKPPYPTQPQLPGFPGQPQPPVPPQPPYPPGTTPSYGFHPPGPAWP
RY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH