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Report for CCDS29574.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29574.1 Public Mus musculus 19 Dagla 23 108 98 CCDS HistoryNCBI Gene:269060Re-query CCDS DB by CCDS ID:29574.1Re-query CCDS DB by GeneID:269060See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29574.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039327.10 ENSMUSP00000046358.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039327.10Link to Ensembl Protein Viewer:ENSMUSP00000046358.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000039327Re-query CCDS DB by Protein ID:ENSMUSP00000046358
Original member Current member NCBI NM_198114.2 NP_932782.2 Accepted alive Link to Nucleotide Sequence:NM_198114.2Link to Protein Sequence:NP_932782.2Re-query CCDS DB by Nucleotide ID:NM_198114Re-query CCDS DB by Protein ID:NP_932782Link to BLAST:NP_932782.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932782.2 1044 Q6WQJ1 1044 100% 0 0

Chromosomal Locations for CCDS 29574.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10247664 10248624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10250369 10250556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10251067 10251196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10252039 10252238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10253330 10253402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10253717 10253785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10254807 10254949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10255661 10255741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10256124 10256201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10256297 10256380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10256818 10256971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10260651 10260775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10262494 10262571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10263094 10263228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10265008 10265095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10269187 10269325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10269717 10269818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10270988 10271199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10271494 10271588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3135 nt):
ATGCCCGGGATCGTGGTGTTCCGGCGGCGCTGGTCTGTGGGCAGCGATGACCTCGTCCTGCCAGCTATCT
TCCTCTTCCTGCTACACACCACCTGGTTTGTAATCCTGTCTGTGGTGCTCTTCGGCTTGGTCTATAACCC
ACACGAGGCCTGCTCCCTGAACCTGGTGGACCACGGCCGAGGCTACCTGGGCATCCTTCTGAGCTGTATG
ATTGCCGAAATGGCTATCATCTGGCTGAGCATGCGTGGGGGCATCCTCTACACAGAACCCCGGGACTCCA
TGCAGTACGTGCTCTACGTGCGCCTGGCCATCTTGGTGATTGAGTTCATCTACGCTATCGTGGGCATCGT
CTGGCTCACACAGTACTACACCTCCTGCAATGACCTCACTGCTAAGAATGTCACCCTCGGAATGGTCGTC
TGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCT
TCGTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCGGCACCGGTTAGA
GGAGGGTCAGGCCACCAGCTGGTCCCGCCGTCTAAAAGTGTTCCTCTGTTGCACCCGGACAAAGGATTCC
CAGTCAGATGCCTACTCAGAAATCGCCTACCTCTTTGCTGAATTTTTCCGTGACCTCGACATCGTGCCCT
CCGACATCATTGCTGGCCTGGTGCTGCTTAGACAGCGGCAGCGAGCCAAACGCAATGCGGTGCTGGACGA
GGCAAACAATGACATCTTGGCTTTCCTGTCTGGGATGCCAGTGACCAGAAACACCAAGTACCTCGACCTC
AAGAACTCGCACGAGATGCTACGCTACAAAGAAGTCTGCTACTACATGCTCTTTGCCCTAGCCGCCTATG
GCTGGCCCATGTACCTGATGAGGAAGCCCACCTGTGGTCTCTGCCAGCTGGCTCGGTCCTGCTCGTGCTG
TCTCTGCCCTGCACGACCCCGATTCGCCCCTGGGGTCACCATTGAGGAAGACAACTGTTGTGGCTGCAAC
GCAATCGCTATCCGCCGTCACTTCCTGGATGAGAACATGACTGCTGTAGATATTGTCTACACCTCCTGTC
ACGATGCGGTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTAT
CCGGGGAACACTGTCCCCCAAGGATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAG
GGACACAGAGGCACCTGGTTGGGCCACAAGGGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGG
AGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTGGGCCGTGGAACCAAACACTATGGCCTGAT
TGTGGTAGGCCACTCCTTGGGAGCAGGCACAGCCGCCATCCTCTCCTTCCTCCTGCGCCCCCAGTACCCG
ACCCTCAAGTGCTTCGCTTACTCCCCACCAGGAGGCCTGCTAAGTGAGGATGCTATGGAATACTCCAAAG
AGTTTGTGACTGCTGTGGTTCTGGGCAAAGACCTTGTCCCCAGGATTGGCCTTTCCCAGCTGGAAGGTTT
CCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAATGGCGGATCATCGTGGGGGCCACC
AAGTGTATCCCCAAGTCGGAGCTGCCCGAGGATCAGGTGGAGGTGACCACTCTGGCCAGCACACGACTCT
GGACACACCCCAGTGATTTGACCATCGCCCTTTCGGCTAGCACCCCACTCTACCCACCTGGCCGCATCAT
CCACGTGGTTCACAACCATCCTGCTGAGCAGTGCTGCTGCTGTGAGCAGGAGGAGCCCACATACTTTGCC
ATCTGGGGCGACAATAAAGCCTTTAACGAGGTGATCATCTCACCAGCCATGCTGCATGAGCACCTGCCCT
ATGTGGTCATGGAGGGGCTCAATAAGGTGCTGGAGAATTACAACAAAGGAAAGACAGCGCTGCTGTCTGC
TGCAAAGGTCATGGTGAGCCCCACCGAGGTAGACCTCACTCCCGAGCTCATCTTCCAGCAACAGCCGTTG
CCCACGGGCCCACCTCTGCCCACTGGCCTGGCCCTGGAGCTGCCTGCCACAGAGCATCGCAACAGCAGTG
TCAGGAGCAAGTCTCAGTCTGAGATGAGTCTGGAGGGCTTCTCTGAGGGCCGGCTGCTGTCCCCAGTGGC
TGCTGCATCAGCAGCCCGACAAGACCCCGTAGAGCTTCTGCTGCTGTCCACCCAGGAGCGACTGGCAGCA
GAGCTGCAGTCCCGGCGGGCACCACTGGCCACCATGGAGAGCCTCTCAGACACTGAGTCACTGTACAGCT
TCGACTCACGCCGCTCCTCAGGCTTCCGAAGCATCAGAGGCTCGCCCAGCCTCCATGCAGTACTGGAGCG
TGACGAGGGCCACCTGTTTTACATCGACCCGGCCATTCCCGAGGAGAACCCGTCCCTCAGCTCACGCACA
GAGCTGCTGGCAGCCGACAGTCTGTCCAAGCACTCACAGGACACCCAACCCCTGGAGGCGGCTCTAGGCA
GCGGGGGTGTGACTCCTGAGCGACCACCAAGTGCAACCATTGAAGAGGAGGAGGCCGCAGGTGGCAGTGA
GGGTGGTGGGGTGGCCCCCCGGGGAGAGCTGGCACTGCACAATGGGCGCCTGGGGGACTCACCCAGCCCT
CAGGTGCTAGAATTCGCCGAGTTCATTGACAGCCTCTTCAACCTGGACAGCAAGAGCAGCTCCTTCCAGG
ACCTCTACTGCATGATGGTGCCTGAGAGCCCCACTAGTGACTACACTGAGGGCCCCAAGTCCCCCAGCCA
ACAGGAAATCTTGCTTCGGGCTCAGTTTGAGCCCAACCTGGTACCCAAGCCCCCCAGGCTCTTTGCAGGA
TCTGCTGAACCCTCCTCTGGCATCTCGCTCTCACCCTCCTTCCCACTCAGCTCCTCGGGGGAGCTCATGG
ACCTGACCCCCACGGGCCTCAGCAGCCAGGAGTGTCTGGCCACAGACAAGATCCGGACTTCCACCCCCAC
AGGCCACGGGGCCAGCCCCACCAAGCAGGATGACCTGGTCATCTCGGCACGCTAG

Translation (1044 aa):
MPGIVVFRRRWSVGSDDLVLPAIFLFLLHTTWFVILSVVLFGLVYNPHEACSLNLVDHGRGYLGILLSCM
IAEMAIIWLSMRGGILYTEPRDSMQYVLYVRLAILVIEFIYAIVGIVWLTQYYTSCNDLTAKNVTLGMVV
CNWVVILSVCITVLCVFDPTGRTFVKLRATKRRQRNLRTYNLRHRLEEGQATSWSRRLKVFLCCTRTKDS
QSDAYSEIAYLFAEFFRDLDIVPSDIIAGLVLLRQRQRAKRNAVLDEANNDILAFLSGMPVTRNTKYLDL
KNSHEMLRYKEVCYYMLFALAAYGWPMYLMRKPTCGLCQLARSCSCCLCPARPRFAPGVTIEEDNCCGCN
AIAIRRHFLDENMTAVDIVYTSCHDAVYETPFYVAVDHDKKKVVISIRGTLSPKDALTDLTGDAERLPVE
GHRGTWLGHKGMVLSAEYIKKKLEQEMVLSQAFGRDLGRGTKHYGLIVVGHSLGAGTAAILSFLLRPQYP
TLKCFAYSPPGGLLSEDAMEYSKEFVTAVVLGKDLVPRIGLSQLEGFRRQLLDVLQRSTKPKWRIIVGAT
KCIPKSELPEDQVEVTTLASTRLWTHPSDLTIALSASTPLYPPGRIIHVVHNHPAEQCCCCEQEEPTYFA
IWGDNKAFNEVIISPAMLHEHLPYVVMEGLNKVLENYNKGKTALLSAAKVMVSPTEVDLTPELIFQQQPL
PTGPPLPTGLALELPATEHRNSSVRSKSQSEMSLEGFSEGRLLSPVAAASAARQDPVELLLLSTQERLAA
ELQSRRAPLATMESLSDTESLYSFDSRRSSGFRSIRGSPSLHAVLERDEGHLFYIDPAIPEENPSLSSRT
ELLAADSLSKHSQDTQPLEAALGSGGVTPERPPSATIEEEEAAGGSEGGGVAPRGELALHNGRLGDSPSP
QVLEFAEFIDSLFNLDSKSSSFQDLYCMMVPESPTSDYTEGPKSPSQQEILLRAQFEPNLVPKPPRLFAG
SAEPSSGISLSPSFPLSSSGELMDLTPTGLSSQECLATDKIRTSTPTGHGASPTKQDDLVISAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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