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Report for CCDS29549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29549.1 Public Mus musculus 19 Ttc9c 23 108 98 CCDS HistoryNCBI Gene:70387Re-query CCDS DB by CCDS ID:29549.1Re-query CCDS DB by GeneID:70387See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29549.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088092.5 ENSMUSP00000085413.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088092.5Link to Ensembl Protein Viewer:ENSMUSP00000085413.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088092Re-query CCDS DB by Protein ID:ENSMUSP00000085413
Original member Current member EBI ENSMUST00000096751.10 ENSMUSP00000094513.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096751.10Link to Ensembl Protein Viewer:ENSMUSP00000094513.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000096751Re-query CCDS DB by Protein ID:ENSMUSP00000094513
Original member Current member NCBI NM_027412.3 NP_081688.2 Accepted alive Link to Nucleotide Sequence:NM_027412.3Link to Protein Sequence:NP_081688.2Re-query CCDS DB by Nucleotide ID:NM_027412Re-query CCDS DB by Protein ID:NP_081688Link to BLAST:NP_081688.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081688.2 171 Q810A3 171 100% 0 0

Chromosomal Locations for CCDS 29549.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 8811744 8811838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8815854 8816036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8818436 8818673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (516 nt):
ATGGAGAAGCGCCTTCAGGAGGCTCAGGTATACAAGGAGGAAGGAAACCAGCGCTACCGGGAAGGAAAGT
ACCGAGATGCTGTGAGTAGGTACCATCGAGCTCTTCTTCAGCTGCGGGGTCTGGACCCAAGTCTGCCTTC
CCCTCTTTCTAGTCTGGGACCTCAGGGCCCAGCTCTCACACCGGAGCAAGAAAACATACTGCACACCATC
CAGACCCACTGCTACAACAACCTAGCTGCCTGTCTCCTCCAGATGGAGCCAGTGAACTATGAACGAGTGA
GGGAATACAGTCAGAAAGTCCTAGAACGACAACCCGATAATGCCAAGGCCTTGTATCGGGCTGGAGTAGC
CTTCTTCCACCTGCAAGACTATGACCGGGCTCGACACCACCTGCTTGCTGCTGTCAATAGGCAACCTAAA
GATGCCAATGTTCGGCGGTACCTCCAGTTGACGCAGTCAGAACTCAGCAGCTACCATAGGAAGGAGAAAC
AGCTGTACCTGGGCATGTTTGGTTAA

Translation (171 aa):
MEKRLQEAQVYKEEGNQRYREGKYRDAVSRYHRALLQLRGLDPSLPSPLSSLGPQGPALTPEQENILHTI
QTHCYNNLAACLLQMEPVNYERVREYSQKVLERQPDNAKALYRAGVAFFHLQDYDRARHHLLAAVNRQPK
DANVRRYLQLTQSELSSYHRKEKQLYLGMFG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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