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Report for CCDS2949.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2949.1 Public Homo sapiens 3 CCDC54 24 110 108 CCDS HistoryNCBI Gene:84692Re-query CCDS DB by CCDS ID:2949.1Re-query CCDS DB by GeneID:84692See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2949.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261058.3 ENSP00000261058.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261058.3Link to Ensembl Protein Viewer:ENSP00000261058.1Re-query CCDS DB by Nucleotide ID:ENST00000261058Re-query CCDS DB by Protein ID:ENSP00000261058
Original member Current member NCBI NM_032600.3 NP_115989.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032600.3Link to Protein Sequence:NP_115989.1Re-query CCDS DB by Nucleotide ID:NM_032600Re-query CCDS DB by Protein ID:NP_115989Link to BLAST:NP_115989.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115989.1 328 Q8NEL0 328 100% 0 0

Chromosomal Locations for CCDS 2949.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 107377588 107378574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGTACACACTTCACACCAAAAGGGTAAAAGCTGCTGCTAGGCAGATGTGGACTTCAAATCTCTCCAAGG
TCAGACAGTCTCTTAAAAATGTTTACCACAAATGTAAGATTCGGCACCAAGATTCAACTGGATATCCCAC
TGTGACATCTGATGATTGTAATCAAGATGATGATAGTTATGACGGAAAAATGAATCTTCCAGTAGTGCTC
CAAGATGTTAAAACTGCTCAAGTTGAACTTTTCAGCCAAATGACTGACATTGTCCATATGATACCAAAAG
TCCAGGAAAAGACTGACTTGTATCAAAAACAGATGGAGGTCCTGGAAACCAGAATGAATGTTAATGAAGA
CAAACAATGCACAACGACTAAAGATATCCTCTCTATGAAAGAAGACATCAAGGCATTAAAGAAGAAGGTG
ACAGAACTGGAAATTCAGAATTCCTGCTCCACGATACATTGTCTAGAGATTCTGGAGGGAGAAAGGGGTA
AAGAAATCACAGAACTGCTTTACAAACTCATACAACCAGCAACTCTGAAGAACACTTTGGCCTCTACAGA
CATGGAAATCTCTTCAGCAGAACCAGAGAAAGTGCCCAGTTATCCAAAGTCCACTGACCATCTTGAGAAA
AAAACAATTTCTCCCCAAATGAAAACTCTGAAGAAACGTAACCATCAAAATGCATCAAGGAGCTTTGAAA
AAGCAAAGCCAAATATTTACATTTACCCAGACTTCAGTACATGGATCAAGCTAACTTTTGTTCATGGAGG
AAAATGGACATTTTTCCTCAGTGCTACCAAGTTAGAAGAATTCATCCAGTGGCTTCTTTCTAGGCCAACC
ATTCTTCCTGAGGAACCCCAGGTCATAACCCAGAGATACTGTCCATTCACTGGGCCCATTTTGAGCTTGA
CCACAATCTGTCTCTCCATCTTCAACAATATTTACGGCTTTATTTGTTCCTTAAAAGAAGAAGTAACTCG
ACTATAG

Translation (328 aa):
MYTLHTKRVKAAARQMWTSNLSKVRQSLKNVYHKCKIRHQDSTGYPTVTSDDCNQDDDSYDGKMNLPVVL
QDVKTAQVELFSQMTDIVHMIPKVQEKTDLYQKQMEVLETRMNVNEDKQCTTTKDILSMKEDIKALKKKV
TELEIQNSCSTIHCLEILEGERGKEITELLYKLIQPATLKNTLASTDMEISSAEPEKVPSYPKSTDHLEK
KTISPQMKTLKKRNHQNASRSFEKAKPNIYIYPDFSTWIKLTFVHGGKWTFFLSATKLEEFIQWLLSRPT
ILPEEPQVITQRYCPFTGPILSLTTICLSIFNNIYGFICSLKEEVTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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