NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29459.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29459.1 Public Mus musculus 19 Eif1ad 23 108 98 CCDS HistoryNCBI Gene:69860Re-query CCDS DB by CCDS ID:29459.1Re-query CCDS DB by GeneID:69860See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29459.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025759.8 ENSMUSP00000025759.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025759.8Link to Ensembl Protein Viewer:ENSMUSP00000025759.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025759Re-query CCDS DB by Protein ID:ENSMUSP00000025759
Original member Current member NCBI NM_027236.2 NP_081512.1 Accepted alive Link to Nucleotide Sequence:NM_027236.2Link to Protein Sequence:NP_081512.1Re-query CCDS DB by Nucleotide ID:NM_027236Re-query CCDS DB by Protein ID:NP_081512Link to BLAST:NP_081512.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081512.1 170 Q3THJ3 170 100% 0 0

Chromosomal Locations for CCDS 29459.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5368190 5368276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5368422 5368530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5368617 5368725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5368895 5368942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5369926 5370085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (513 nt):
ATGTCTCAGGCCAGCAAGAGGAAGCATGTGGTGCAGGAGGTGCTGGGGGAGCACATGGTGCCTTCTGACC
ACCAGCAAATAGTGAAAGTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCA
GCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGGGGATTTCCTCATT
GTTGACCCTATTGAAGAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCC
GCTCTCTACAGAAGGAGGGTCACTGGCCTGAGGCCTTCTCTGAGGTAGCTGAGAAACAGAACAATATGAA
CAGAGAGAGTCAACCAGAACTCCCTGCTGAGCCACAGCTGTCAGGAGAAGGGTCAAGTTCTGAAGATGAT
TCTGACCTCTTTGTCAACACCAATCACAGACAGTATCATGAGAGTGAGGAGGAGAGTGAAGAAGACGAGG
AGGAGGAGGAGGAGGCAGCCTGA

Translation (170 aa):
MSQASKRKHVVQEVLGEHMVPSDHQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLI
VDPIEEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSEVAEKQNNMNRESQPELPAEPQLSGEGSSSEDD
SDLFVNTNHRQYHESEEESEEDEEEEEEAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH