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Report for CCDS29397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29397.1 Public Mus musculus 19 Ppp6r3 23 108 98 CCDS HistoryNCBI Gene:52036Re-query CCDS DB by CCDS ID:29397.1Re-query CCDS DB by GeneID:52036See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29397.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025846.15 ENSMUSP00000025846.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025846.15Link to Ensembl Protein Viewer:ENSMUSP00000025846.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025846Re-query CCDS DB by Protein ID:ENSMUSP00000025846
Original member Current member NCBI NM_029456.2 NP_083732.1 Accepted alive Link to Nucleotide Sequence:NM_029456.2Link to Protein Sequence:NP_083732.1Re-query CCDS DB by Nucleotide ID:NM_029456Re-query CCDS DB by Protein ID:NP_083732Link to BLAST:NP_083732.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083732.1 844 Q922D4-1 844 100% 0 0

Chromosomal Locations for CCDS 29397.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3457000 3457051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3459361 3459480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3464545 3464695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3466493 3466599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3467141 3467294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3469641 3469762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3470971 3471101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3471979 3472033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3473769 3473866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3484831 3484916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3486976 3487091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3490774 3490838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3492366 3492515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3493886 3494038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3496522 3496651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3507242 3507355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3511929 3512041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3514654 3514719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3518245 3518382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3521734 3521920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3526702 3526928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2535 nt):
ATGTTTTGGAAATTTGATCTTCACTCATCATCCCACATAGACACGCTTCTAGAGAGAGAAGATGTGACAC
TGAAGGAGCTAATGGATGAGGAGGATGTTCTACAGGAGTGTAAAGCACAGAACCGCAAGCTCATAGAATT
TCTGTTAAAAGCAGAATGTCTGGAAGATTTAGTCTCATTCATTATAGAAGAACCACCTCAAGATATGGAT
GAGAAGATCCGATACAAGTATCCAAATATATCTTGTGAGTTGCTCACATCTGATGTCTCCCAGATGAATG
ATAGACTGGGGGAAGATGAGTCCTTGCTAATGAAATTGTATAGCTTCCTCCTAAATGAGTCCCCCTTGAA
CCCACTACTCGCCAGTTTCTTCAGCAAGGTGCTAAGTATTCTTATCAGCAGAAAACCAGAACAGATTGTG
GATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGG
ATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAATTGGCTAAA
TGAGGAGAGGATTATCCAGAGGCTTGTGGAAATAGTTCACCCATCGCAAGAAGAAGATCGGCATTCAAAT
GCCTCACAATCACTTTGTGAAATTGTTCGCCTGAGCAGAGACCAGATGTTACAAGTTCAGAACAGTACAG
AGCCAGACCCCCTGCTTGCCACTCTAGAAAAGCAAGAAATTATTGAGCAGCTTCTGTCAAATATTTTTCA
CAAGGAGAAGAATGAATCGGCCATAGTCAGTGCAATTCAGATTTTGCTGACTTTGCTTGAGACTCGACGG
CCAACGTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGA
GTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAGAAAAG
TGTGATGAAGACTACATGGGGTATATTGGACCCACCTGTGGGGAATACTCGATTAAATGTCATTAGGTTG
ATATCCAGCCTGCTCCAAACCAATACCAGCAGCATAAATGGAGACCTGATGGAACTGAACAGCATTGGCG
TCATATTGGATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGC
TCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAGAATGGCACAATTACTGATCAAGACTCCACTGGTGAC
AATTTGTTATTGAAGCATCTTTTTCAAAAGTGTCAGTTAATAGAGCGAATACTTGAAGCCTGGGACACAA
ATGAGAAGAAACAGGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACGAGGATAGCTAACTG
TATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCGTTAGTACAGCAGCTCATCAAAGATCTTCCCGAT
GAAGTCAGGGAGCGGTGGGAGACGTTCTGCACGAACTCCTTAGGAGAGACGAACAAGAGGAACACGGTAG
ATCTAGCCTTTTCTGATTATCAGATGCAACAAATGACGTCCAATTTTATTGACCAGTTTGGCTTCAACGA
TGAGAAGTTTGCAGACCAAGACGACATTGGCAATGTTTCTTTTGATCGGGTGTCAGATATCAACTTTACT
CTCAATACAAATGAAAGTGGAAATATTGCCCTGTTTGAAGCATGTTGTAAAGAACGGATACAACAATTTG
ATGATGGCGGCTCTGATGAAGAGGATATCTGGGAGGAGAAGCACATTGCATTTACTCCCGAATCCCAGAG
GAGGTCCAGCTCTGGCAGTACGGACAGTGAAGAAAGTACAGACTCTGAAGAAGAAGATGGGGCCAAACAA
GACCTGTTTGAGTCCAGCAGTGCAAACACAGAGGACAAAATGGAGGTGGATCTGAATGAGCCACCCACCT
GGTCAGCCAACTTTGACGTCCCAATGGAAACCACCCATGGTGCTCCCTTAGACTCCGTGGGATCCGATGT
CTGGAGCACAGAGGAGCCAATGCCAACTAAAGAGACAGGCTGGGCTTCCTTTTCAGAGTTCACATCCTCC
CTGAGCACAAAGGAGTCTTTAAGGAGTAATTCGCCTGTGGAAATGGAAACCAGCACTGAATCCGTGGACC
CCTTGACACCTGGTGCAGCTGCCTTGGCCACTCAGCCAGAGGCACCAGGCAGTATGGCCATGGAAGCCAG
CTCAGATGGGGAAGAGGATGCTGAGAGTACAGACAAGGTAACTGAGACCGTGATGAATGGCGGCATGAAG
GAAACACTCAGCCTCACTGTAGACGCCAAGACAGAGACTGCAGTCTTCAAAAGTGAGGAAGAAAAACTGT
CTACCTCTCAAGATGCTGCTTGCAAAGATGCAGAAGAGACCCCAGAGCCAGCAGAGGCCAAGTGCACAGC
TCCCCTGACTCCCAGCAGTAGTCCCGAGCAAAGGACCGACCAGCCAAGCATGCCAAGCGACCCATCAGTT
AATGGCCCTGTATGA

Translation (844 aa):
MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMD
EKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKLYSFLLNESPLNPLLASFFSKVLSILISRKPEQIV
DFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSN
ASQSLCEIVRLSRDQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRR
PTFEGHIEICPPGMSHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRL
ISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDSTGD
NLLLKHLFQKCQLIERILEAWDTNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSALVQQLIKDLPD
EVRERWETFCTNSLGETNKRNTVDLAFSDYQMQQMTSNFIDQFGFNDEKFADQDDIGNVSFDRVSDINFT
LNTNESGNIALFEACCKERIQQFDDGGSDEEDIWEEKHIAFTPESQRRSSSGSTDSEESTDSEEEDGAKQ
DLFESSSANTEDKMEVDLNEPPTWSANFDVPMETTHGAPLDSVGSDVWSTEEPMPTKETGWASFSEFTSS
LSTKESLRSNSPVEMETSTESVDPLTPGAAALATQPEAPGSMAMEASSDGEEDAESTDKVTETVMNGGMK
ETLSLTVDAKTETAVFKSEEEKLSTSQDAACKDAEETPEPAEAKCTAPLTPSSSPEQRTDQPSMPSDPSV
NGPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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