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Report for CCDS29392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29392.1 Public Mus musculus 18 Cd226 23 108 98 CCDS HistoryNCBI Gene:225825Re-query CCDS DB by CCDS ID:29392.1Re-query CCDS DB by GeneID:225825See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29392.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037142.12 ENSMUSP00000043551.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037142.12Link to Ensembl Protein Viewer:ENSMUSP00000043551.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000037142Re-query CCDS DB by Protein ID:ENSMUSP00000043551
Original member Current member EBI ENSMUST00000236828.1 ENSMUSP00000158324.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236828.1Link to Ensembl Protein Viewer:ENSMUSP00000158324.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236828Re-query CCDS DB by Protein ID:ENSMUSP00000158324
Original member Current member NCBI NM_178687.2 NP_848802.2 Accepted alive Link to Nucleotide Sequence:NM_178687.2Link to Protein Sequence:NP_848802.2Re-query CCDS DB by Nucleotide ID:NM_178687Re-query CCDS DB by Protein ID:NP_848802Link to BLAST:NP_848802.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848802.2 333 Q8K4F0 333 100% 0 0

Chromosomal Locations for CCDS 29392.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 89206596 89206641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 89207027 89207365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 89246985 89247332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 89263271 89263367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 89267900 89267957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 89268968 89269081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGGCTTATGTTACTTGGCTTTTGGCTATTCTTCATGTGCACAAAGCACTGTGTGAAGAGACATTGTGGG
ACACAACAGTTCGGCTTTCTGAGACTATGACTCTGGAATGTGTATATCCATTGACGCATAACTTAACCCA
GGTGGAGTGGACCAAGAACACTGGCACAAAGACAGTGAGCATAGCAGTTTACAACCCTAACCATAATATG
CATATAGAATCTAACTACCTCCATAGAGTACACTTCCTAAACTCAACAGTGGGGTTCCGCAACATGAGCC
TTTCCTTTTACAATGCCTCAGAAGCAGACATTGGCATCTACTCCTGCTTGTTTCATGCTTTCCCAAATGG
ACCTTGGGAAAAGAAGATAAAAGTAGTCTGGTCAGATAGTTTTGAGATAGCAGCACCCTCGGATAGCTAC
CTGTCTGCAGAACCTGGACAAGATGTCACACTCACTTGCCAGCTTCCAAGGACTTGGCCAGTGCAACAAG
TCATATGGGAAAAAGTCCAGCCCCATCAGGTAGACATCTTAGCTTCCTGTAACCTATCTCAAGAGACAAG
ATACACTTCAAAGTACCTAAGACAAACAAGGAGCAACTGTAGCCAGGGGAGCATGAAGAGCATCCTCATC
ATTCCAAATGCCATGGCCGCTGACTCAGGACTTTACAGATGTCGCTCAGAGGCCATTACAGGAAAAAACA
AGTCCTTTGTCATAAGGCTGATCATAACTGATGGTGGAACCAATAAACATTTTATCCTTCCCATCGTTGG
AGGGTTAGTTTCACTGTTACTTGTCATCCTAATTATCATCATTTTCATTTTATATAACAGGAAGAGACGG
AGACAGGTGAGAATTCCACTTAAAGAGCCCAGGGATAAACAGAGTAAGGTAGCCACCAACTGCAGAAGTC
CTACTTCTCCCATCCAGTCTACAGATGATGAAAAAGAGGACATTTATGTAAACTATCCAACTTTCTCTCG
AAGACCAAAACCAAGACTCTAA

Translation (333 aa):
MAYVTWLLAILHVHKALCEETLWDTTVRLSETMTLECVYPLTHNLTQVEWTKNTGTKTVSIAVYNPNHNM
HIESNYLHRVHFLNSTVGFRNMSLSFYNASEADIGIYSCLFHAFPNGPWEKKIKVVWSDSFEIAAPSDSY
LSAEPGQDVTLTCQLPRTWPVQQVIWEKVQPHQVDILASCNLSQETRYTSKYLRQTRSNCSQGSMKSILI
IPNAMAADSGLYRCRSEAITGKNKSFVIRLIITDGGTNKHFILPIVGGLVSLLLVILIIIIFILYNRKRR
RQVRIPLKEPRDKQSKVATNCRSPTSPIQSTDDEKEDIYVNYPTFSRRPKPRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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