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Report for CCDS29337.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29337.1 Public Mus musculus 18 Smad4 23 108 98 CCDS HistoryNCBI Gene:17128Re-query CCDS DB by CCDS ID:29337.1Re-query CCDS DB by GeneID:17128See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29337.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025393.13 ENSMUSP00000025393.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025393.13Link to Ensembl Protein Viewer:ENSMUSP00000025393.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025393Re-query CCDS DB by Protein ID:ENSMUSP00000025393
Original member Current member EBI ENSMUST00000114939.1 ENSMUSP00000110589.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114939.1Link to Ensembl Protein Viewer:ENSMUSP00000110589.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114939Re-query CCDS DB by Protein ID:ENSMUSP00000110589
Original member Current member NCBI NM_008540.3 NP_032566.2 Accepted alive Link to Nucleotide Sequence:NM_008540.3Link to Protein Sequence:NP_032566.2Re-query CCDS DB by Nucleotide ID:NM_008540Re-query CCDS DB by Protein ID:NP_032566Link to BLAST:NP_032566.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032566.2 551 P97471 551 100% 0 0

Chromosomal Locations for CCDS 29337.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 73640258 73640469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73641783 73641921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73648885 73649053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73649726 73649909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73657195 73657245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73658568 73658684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73658779 73658898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73662658 73662867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73675161 73675190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73675771 73675945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73677663 73677911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGGACAATATGTCTATAACAAATACACCAACAAGTAACGATGCCTGTCTGAGCATTGTACATAGTTTGA
TGTGTCATAGACAAGGTGGGGAAAGTGAAACCTTTGCAAAAAGAGCAATTGAGAGTTTGGTAAAGAAGCT
GAAAGAGAAAAAAGATGAATTGGATTCTTTAATAACAGCTATAACTACAAATGGAGCTCATCCTAGCAAG
TGTGTCACCATACAGAGAACATTGGATGGACGACTTCAGGTGGCTGGTCGGAAAGGATTTCCTCATGTGA
TCTATGCCCGTCTGTGGAGGTGGCCTGATCTACACAAGAATGAACTAAAGCATGTTAAATATTGTCAGTA
TGCGTTTGACTTAAAATGTGACAGTGTCTGTGTGAATCCATATCACTATGAGCGGGTTGTCTCACCTGGA
ATTGATCTCTCAGGATTAACACTGCAGAGTAATGCTCCAAGTATGTTAGTGAAGGATGAGTACGTTCACG
ACTTTGAAGGACAGCCGTCCTTACCCACTGAAGGACATTCGATTCAAACCATCCAACACCCGCCAAGTAA
TCGCGCATCAACGGAGACGTACAGCGCCCCGGCTCTGTTAGCCCCGGCAGAGTCTAACGCCACCAGCACC
ACCAACTTCCCCAACATTCCTGTGGCTTCCACAAGTCAGCCGGCCAGTATTCTGGCGGGCAGCCATAGTG
AAGGACTGTTGCAGATAGCTTCAGGGCCTCAGCCAGGACAGCAGCAGAATGGATTTACTGCTCAGCCAGC
TACTTACCATCATAACAGCACTACCACCTGGACTGGAAGTAGGACTGCACCATACACACCTAATTTGCCT
CACCACCAAAACGGCCATCTTCAGCACCACCCGCCTATGCCGCCCCATCCTGGACATTACTGGCCAGTTC
ACAATGAGCTTGCATTCCAGCCTCCCATTTCCAATCATCCTGCTCCTGAGTACTGGTGCTCCATTGCTTA
CTTTGAAATGGACGTTCAGGTAGGAGAGACGTTTAAGGTCCCTTCAAGCTGCCCTGTTGTGACTGTGGAT
GGCTATGTGGATCCTTCGGGAGGAGATCGCTTTTGCTTGGGTCAACTCTCCAATGTCCACAGGACAGAAG
CGATTGAGAGAGCGAGGTTGCACATAGGCAAAGGAGTGCAGTTGGAATGTAAAGGTGAAGGTGACGTTTG
GGTCAGGTGCCTTAGTGACCACGCGGTCTTTGTACAGAGTTACTACCTGGACAGAGAAGCTGGCCGAGCA
CCTGGCGACGCTGTTCATAAGATCTACCCAAGCGCGTATATAAAGGTCTTTGATCTGCGGCAGTGTCACC
GGCAGATGCAGCAACAGGCGGCCACTGCGCAAGCTGCAGCTGCTGCTCAGGCGGCGGCCGTGGCAGGGAA
CATCCCTGGCCCTGGGTCCGTGGGTGGAATAGCTCCAGCCATCAGTCTGTCTGCTGCTGCTGGCATCGGT
GTGGATGACCTCCGGCGATTGTGCATTCTCAGGATGAGCTTTGTGAAGGGCTGGGGCCCAGACTACCCCA
GGCAGAGCATCAAGGAAACCCCGTGCTGGATTGAGATTCACCTTCACCGAGCTCTGCAGCTCTTGGATGA
AGTCCTGCACACCATGCCCATTGCGGACCCACAGCCTTTAGACTGA

Translation (551 aa):
MDNMSITNTPTSNDACLSIVHSLMCHRQGGESETFAKRAIESLVKKLKEKKDELDSLITAITTNGAHPSK
CVTIQRTLDGRLQVAGRKGFPHVIYARLWRWPDLHKNELKHVKYCQYAFDLKCDSVCVNPYHYERVVSPG
IDLSGLTLQSNAPSMLVKDEYVHDFEGQPSLPTEGHSIQTIQHPPSNRASTETYSAPALLAPAESNATST
TNFPNIPVASTSQPASILAGSHSEGLLQIASGPQPGQQQNGFTAQPATYHHNSTTTWTGSRTAPYTPNLP
HHQNGHLQHHPPMPPHPGHYWPVHNELAFQPPISNHPAPEYWCSIAYFEMDVQVGETFKVPSSCPVVTVD
GYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRA
PGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLSAAAGIG
VDDLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTMPIADPQPLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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