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Report for CCDS29310.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29310.1 Public Mus musculus 18 Grp 23 108 98 CCDS HistoryNCBI Gene:225642Re-query CCDS DB by CCDS ID:29310.1Re-query CCDS DB by GeneID:225642See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29310.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025395.9 ENSMUSP00000025395.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025395.9Link to Ensembl Protein Viewer:ENSMUSP00000025395.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025395Re-query CCDS DB by Protein ID:ENSMUSP00000025395
Original member Current member EBI ENSMUST00000173985.9 ENSMUSP00000133437.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173985.9Link to Ensembl Protein Viewer:ENSMUSP00000133437.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173985Re-query CCDS DB by Protein ID:ENSMUSP00000133437
Original member Current member NCBI NM_175012.4 NP_778177.1 Accepted alive Link to Nucleotide Sequence:NM_175012.4Link to Protein Sequence:NP_778177.1Re-query CCDS DB by Nucleotide ID:NM_175012Re-query CCDS DB by Protein ID:NP_778177Link to BLAST:NP_778177.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_778177.1 146 Q8R1I2 146 100% 0 0

Chromosomal Locations for CCDS 29310.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 65873607 65873751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65879910 65880151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65886217 65886270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (441 nt):
ATGCGCGGCTCGGAGCTCTCGCTCTTGCTGTTGGCTCTGGTCCTCTGCCAGGCGCCCCGGGGGCCAGCTG
CCCCGGTGTCGACAGGCGCAGGTGGAGGCACGGTCCTGGCTAAGATGTATCCGCGCGGCAGTCACTGGGC
TGTGGGACACTTAATGGGAAAAAAGAGCACGGATGAATCCCCGTCCCTGTATGCGGCTGACAGAGACGGC
CTGAAGGAGCAGCTGAGGGGGTACGTCCGCTGGGAAGAAGCTGCAAGGGATTTGCTGGACCTCCTAGAAG
CTGCTGGGAACCAAAGCCACCAGCCACCTCAGCATCCGCCTCTCAGTCTCCAGCCTACTTGGGATCCCGA
GGACGGCAGCTACTTTAACGACGTTCAAACCGCTAAGTTGGTAGACTCTCTGCTCCAGGTTCTCAAGGAA
AAGGGAGGAACTGCCAGCTGA

Translation (146 aa):
MRGSELSLLLLALVLCQAPRGPAAPVSTGAGGGTVLAKMYPRGSHWAVGHLMGKKSTDESPSLYAADRDG
LKEQLRGYVRWEEAARDLLDLLEAAGNQSHQPPQHPPLSLQPTWDPEDGSYFNDVQTAKLVDSLLQVLKE
KGGTAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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