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Report for CCDS29276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29276.1 Public Mus musculus 18 Camk2a 23 108 98 CCDS HistoryNCBI Gene:12322Re-query CCDS DB by CCDS ID:29276.1Re-query CCDS DB by GeneID:12322See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29276.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102888.9 ENSMUSP00000099952.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102888.9Link to Ensembl Protein Viewer:ENSMUSP00000099952.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102888Re-query CCDS DB by Protein ID:ENSMUSP00000099952
Original member Current member NCBI NM_177407.4 NP_803126.1 Accepted alive Link to Nucleotide Sequence:NM_177407.4Link to Protein Sequence:NP_803126.1Re-query CCDS DB by Nucleotide ID:NM_177407Re-query CCDS DB by Protein ID:NP_803126Link to BLAST:NP_803126.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_803126.1 478 P11798-1 478 100% 0 0

Chromosomal Locations for CCDS 29276.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 60925779 60925840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60941287 60941381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60946986 60947045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60951293 60951347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60952134 60952199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60952285 60952357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60955537 60955639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60957104 60957187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60957300 60957394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60958141 60958263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60958573 60958656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60960003 60960045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60963923 60963963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60969994 60970042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60977940 60978015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60980060 60980154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60984326 60984554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 60984777 60984780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGGCTACCATCACCTGCACCCGATTCACAGAAGAGTACCAGCTCTTTGAGGAACTGGGAAAGGGAGCCT
TCTCTGTGGTGCGCAGGTGTGTGAAGGTGCTGGCTGGTCAGGAGTATGCTGCCAAGATTATCAACACCAA
GAAGCTTTCAGCCAGAGATCACCAGAAGCTGGAGCGTGAGGCCCGCATCTGCCGCTTGTTGAAGCACCCC
AATATCGTCCGACTCCATGACAGCATCTCCGAGGAGGGGCACCACTACCTTATCTTCGATCTGGTTACTG
GTGGGGAACTGTTTGAAGACATTGTGGCCCGGGAGTATTACAGTGAAGCTGATGCCAGCCACTGTATCCA
GCAGATCTTGGAGGCTGTGCTACACTGTCACCAGATGGGGGTGGTGCATCGTGACCTGAAGCCTGAGAAT
CTGTTGCTGGCCTCGAAGCTCAAGGGCGCTGCTGTGAAGCTGGCAGACTTTGGCCTGGCCATAGAGGTGG
AGGGGGAGCAGCAGGCATGGTTTGGGTTCGCAGGGACACCTGGATACCTCTCCCCAGAAGTGCTGAGGAA
GGACCCGTACGGGAAGCCCGTGGACCTGTGGGCCTGTGGCGTCATCCTGTATATCTTGCTGGTTGGGTAT
CCCCCGTTCTGGGATGAAGACCAGCATCGCCTGTACCAGCAGATCAAAGCTGGTGCCTATGATTTCCCAT
CACCAGAATGGGACACCGTCACCCCAGAAGCCAAGGATCTGATCAATAAGATGCTGACCATCAACCCGTC
CAAACGCATCACGGCCGCTGAGGCTCTCAAGCACCCATGGATCTCGCACCGCTCCACCGTGGCCTCCTGC
ATGCACAGACAGGAGACCGTGGACTGCCTGAAGAAGTTCAATGCCAGGAGGAAACTGAAGGGAGCCATCC
TCACCACTATGCTGGCCACCAGGAACTTCTCCGGAGGGAAGAGCGGAGGAAACAAGAAGAACGATGGTGT
GAAGGAATCTTCTGAGAGCACCAACACCACCATTGAGGACGAAGACACCAAAGTGCGCAAACAGGAAATT
ATCAAAGTGACAGAGCAGCTGATCGAAGCCATAAGCAATGGAGACTTTGAGTCCTACACGAAGATGTGCG
ACCCTGGAATGACAGCCTTTGAACCAGAGGCCCTGGGGAACCTGGTGGAGGGCCTGGACTTTCATCGATT
CTATTTTGAAAACCTGTGGTCCCGGAACAGCAAGCCCGTGCACACCACCATCCTGAACCCTCACATCCAC
CTGATGGGTGACGAGTCAGCCTGCATCGCCTATATCCGCATCACTCAGTACCTGGATGCAGGCGGCATAC
CCCGCACGGCCCAGTCAGAGGAGACCCGCGTCTGGCACCGCAGGGACGGCAAATGGCAGATCGTCCACTT
CCACAGATCTGGGGCGCCCTCCGTCCTGCCGCATTGA

Translation (478 aa):
MATITCTRFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAKIINTKKLSARDHQKLEREARICRLLKHP
NIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRDLKPEN
LLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGY
PPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKHPWISHRSTVASC
MHRQETVDCLKKFNARRKLKGAILTTMLATRNFSGGKSGGNKKNDGVKESSESTNTTIEDEDTKVRKQEI
IKVTEQLIEAISNGDFESYTKMCDPGMTAFEPEALGNLVEGLDFHRFYFENLWSRNSKPVHTTILNPHIH
LMGDESACIAYIRITQYLDAGGIPRTAQSEETRVWHRRDGKWQIVHFHRSGAPSVLPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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