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Report for CCDS29232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29232.1 Public Mus musculus 18 Ticam2 23 108 98 CCDS HistoryNCBI Gene:225471Re-query CCDS DB by CCDS ID:29232.1Re-query CCDS DB by GeneID:225471See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29232.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070084.10 ENSMUSP00000066239.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070084.10Link to Ensembl Protein Viewer:ENSMUSP00000066239.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000070084Re-query CCDS DB by Protein ID:ENSMUSP00000066239
Original member Current member NCBI NM_173394.3 NP_775570.1 Accepted alive Link to Nucleotide Sequence:NM_173394.3Link to Protein Sequence:NP_775570.1Re-query CCDS DB by Nucleotide ID:NM_173394Re-query CCDS DB by Protein ID:NP_775570Link to BLAST:NP_775570.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775570.1 232 Q8BJQ4 232 100% 0 0

Chromosomal Locations for CCDS 29232.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 46560320 46561018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGGGTGTTGGGAAGTCTAAACTAGATAAGTGCCCCCTTTCTTGGCATAAAAAAGACAGTGTGGATGCCG
ATCAAGACGGCCATGAGTCAGACTCCAAGAATTCTGAGGAAGCCTGCTTGCGTGGTTTTGTGGAGCAGAG
CAGTGGATCAGAGCCACCAACAGGAGAGCAGGACCAACCTGAGGCAAAGGGGGCGGGGCCTGAGGAGCAA
GATGAAGAAGAGTTCCTCAAATTTGTGATACTTCATGCAGAAGATGACACCGACGAGGCCCTCAGAGTCC
AGGATCTACTGCAAAACGACTTTGGTATCAGGCCGGGGATCGTTTTCGCCGAGATGCCGTGCGGAAGACT
GCATTTGCAGAATCTAGACGATGCGGTCAATGGGTCGGCCTGGACCATCTTGTTACTGACTGAGAACTTC
CTAAGAGACACCTGGTGTAACTTCCAGTTCTACACTTCCCTGATGAATTCTGTGAGCAGGCAGCACAAGT
ACAACTCCGTCATACCCATGCGGCCCCTGAACAGCCCTCTTCCCCGGGAACGGACTCCCTTGGCGCTGCA
AACCATCAATGCCTTAGAGGAAGAAAGTCAAGGCTTTTCCACACAAGTGGAGAGAATTTTCCGGGAGTCT
GTATTTGAGAGGCAACAAAGTATATGGAAAGAGACACGAAGTGTGTCGCAGAAACAGTTCATTGCCTGA

Translation (232 aa):
MGVGKSKLDKCPLSWHKKDSVDADQDGHESDSKNSEEACLRGFVEQSSGSEPPTGEQDQPEAKGAGPEEQ
DEEEFLKFVILHAEDDTDEALRVQDLLQNDFGIRPGIVFAEMPCGRLHLQNLDDAVNGSAWTILLLTENF
LRDTWCNFQFYTSLMNSVSRQHKYNSVIPMRPLNSPLPRERTPLALQTINALEEESQGFSTQVERIFRES
VFERQQSIWKETRSVSQKQFIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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