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Report for CCDS29227.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29227.1 Public Mus musculus 18 Npy6r 23 108 98 CCDS HistoryNCBI Gene:18169Re-query CCDS DB by CCDS ID:29227.1Re-query CCDS DB by GeneID:18169See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29227.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042747.3 ENSMUSP00000040797.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042747.3Link to Ensembl Protein Viewer:ENSMUSP00000040797.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000042747Re-query CCDS DB by Protein ID:ENSMUSP00000040797
Original member Current member NCBI NM_010935.4 NP_035065.1 Accepted alive Link to Nucleotide Sequence:NM_010935.4Link to Protein Sequence:NP_035065.1Re-query CCDS DB by Nucleotide ID:NM_010935Re-query CCDS DB by Protein ID:NP_035065Link to BLAST:NP_035065.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035065.1 371 Q61212 371 100% 0 0

Chromosomal Locations for CCDS 29227.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 44275514 44276629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGGAAGTGCTCACAAACCAGCCAACACCTAATAAAACCAGTGGCAAGAGCAACAACTCGGCATTTTTCT
ACTTTGAATCCTGCCAACCCCCTTTTCTAGCCATACTCTTGCTACTCATAGCATATACTGTGATCCTAAT
CATGGGCATTTTTGGAAACCTCTCTCTTATCATCATCATCTTTAAGAAACAGAGAGAAGCTCAAAATGTT
ACCAACATACTGATTGCCAACCTGTCCCTCTCTGACATCTTGGTGTGTGTCATGTGCATCCCTTTTACGG
TCATCTACACTCTGATGGACCACTGGGTATTTGGGAACACTATGTGTAAACTCACTTCCTACGTGCAAAG
TGTCTCAGTTTCTGTGTCCATATTCTCCCTTGTGTTGATTGCTATTGAACGATATCAGCTGATTGTGAAC
CCCCGTGGCTGGAAACCCAGAGTAGCTCATGCCTATTGGGGGATCATCTTGATTTGGCTCATTTCTCTGA
CATTGTCTATTCCCTTATTCCTGTCCTACCACCTCACCAATGAGCCCTTTCATAATCTCTCTCTCCCTAC
TGACATCTACACCCACCAGGTAGCTTGTGTGGAGATTTGGCCTTCTAAACTGAACCAACTCCTCTTTTCT
ACATCATTATTTATGCTCCAGTATTTTGTCCCTCTGGGTTTCATTCTTATCTGCTACCTGAAGATCGTTC
TCTGCCTCCGAAAAAGAACTAGGCAGGTGGACAGGAGAAAGGAAAATAAGAGCCGTCTCAATGAGAACAA
GAGGGTAAATGTGATGTTGATTTCCATCGTAGTGACTTTTGGAGCCTGCTGGTTGCCCTTGAACATTTTC
AATGTCATCTTCGACTGGTATCATGAGATGCTGATGAGCTGCCACCACGACCTGGTATTTGTAGTTTGCC
ACTTGATTGCTATGGTTTCTACTTGCATAAATCCTCTCTTTTATGGATTTCTCAACAAAAACTTCCAGAA
GGATCTAATGATGCTTATTCACCACTGTTGGTGTGGTGAACCTCAGGAAAGTTATGAAAATATTGCCATG
TCTACTATGCACACAGATGAATCCAAGGGATCATTAAAACTGGCTCACATACCAACAGGCATATAG

Translation (371 aa):
MEVLTNQPTPNKTSGKSNNSAFFYFESCQPPFLAILLLLIAYTVILIMGIFGNLSLIIIIFKKQREAQNV
TNILIANLSLSDILVCVMCIPFTVIYTLMDHWVFGNTMCKLTSYVQSVSVSVSIFSLVLIAIERYQLIVN
PRGWKPRVAHAYWGIILIWLISLTLSIPLFLSYHLTNEPFHNLSLPTDIYTHQVACVEIWPSKLNQLLFS
TSLFMLQYFVPLGFILICYLKIVLCLRKRTRQVDRRKENKSRLNENKRVNVMLISIVVTFGACWLPLNIF
NVIFDWYHEMLMSCHHDLVFVVCHLIAMVSTCINPLFYGFLNKNFQKDLMMLIHHCWCGEPQESYENIAM
STMHTDESKGSLKLAHIPTGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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